Detailed information NTG0611386

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: LE189_RS10565
• Genome accession: NZ_CP084444
• Coordinates: 2187743..2190130 (+)
• Length: 795 a.a.
• NCBI ID: WP_002492901.1
• Uniprot ID: A0A853V584
• Organism: Staphylococcus lugdunensis strain RMLUG6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2182743..2195130

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LE189_RS10540 (LE189_10530)	-	2183102..2183242 (+)	141	WP_002458939.1	SAS049 family protein	-
LE189_RS10545 (LE189_10535)	-	2183443..2184444 (-)	1002	WP_002458940.1	LLM class flavin-dependent oxidoreductase	-
LE189_RS10550 (LE189_10540)	-	2184674..2185816 (+)	1143	WP_002492915.1	cysteine desulfurase family protein	-
LE189_RS10555 (LE189_10545)	mnmA	2185816..2186928 (+)	1113	WP_002492894.1	tRNA 2-thiouridine(34) synthase MnmA	-
LE189_RS10560 (LE189_10550)	-	2187070..2187741 (+)	672	WP_002492893.1	tetratricopeptide repeat protein	-
LE189_RS10565 (LE189_10555)	recD2	2187743..2190130 (+)	2388	WP_002492901.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LE189_RS10570 (LE189_10560)	alaS	2190398..2193028 (+)	2631	WP_037540786.1	alanine--tRNA ligase	-
LE189_RS10575 (LE189_10565)	-	2193094..2193354 (+)	261	WP_002458946.1	IreB family regulatory phosphoprotein	-
LE189_RS10580 (LE189_10570)	ruvX	2193358..2193786 (+)	429	WP_002458947.1	Holliday junction resolvase RuvX	-
LE189_RS10585 (LE189_10575)	-	2193799..2194107 (+)	309	WP_002458948.1	DUF1292 domain-containing protein	-
LE189_RS10590 (LE189_10580)	-	2194469..2195110 (+)	642	WP_037540784.1	O-methyltransferase	-

Sequence

Protein

• Length: 795 a.a.
• Molecular weight: 89602.38 Da
• Isoelectric Point: 4.8235

>NTDB_id=611386 LE189_RS10565 WP_002492901.1 2187743..2190130(+) (recD2) [Staphylococcus lugdunensis strain RMLUG6]
MDNPTLLEPTMLKGTVEVILFQNQDNFYTVLKVDTIESNESFDTMPTVVGFFPNIVEGDVYTFKGQVVAHPKYGKQLKAD
TFEKELPQTKDAIITYLSSDLFKGIGKKTAQNIVNTLGENAINDILAHPDILTKVSNLSKKKQEQIAQQIAANQESEKIM
IYLHDLGFGPKLSMAIYQFYQSETINVVDNNPYKLVYDIKGIGFNKADTLARNIGIDFNDPERLKAGILFTLEEECIKQG
HTYLPAETILKSAQTMLSTQGDEIIEIHQLEEMLQILMEEDKLILDQQKIAIPSLYYSELKSVQNLYRILTHTHKLNELE
QSDLQLHIGEIEDSNEVHYAASQKEALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYADYTDDDFPVVLA
APTGRASKRLQEATGLEAMTIHRLIGWNQDTQPEDILDNEIKAKLIIIDEMSMVDTWLFHQFLNAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIQSKKIPRVNLTEVYRQQDGSSIIELAHHMKQNESIDITKRYHDRSFINCSAEQIPDVVKKVVSSAV
SKGYDMSDIQVLAPMYKGSAGIKRLNQILQTILNPKEPDAREIEFGDAAFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFW
AKENALNKDVIIVDFDGNEITFTRQDLIELTHAYCTSIHKSQGSEFPIVIMPVVKQYFRMLQKPILYTGLTRAKQSLVLL
GDPQAFDIGLKTNGQVRMTQLYDLLEAYFGHETQNSNDDNIIAKHKKVTLSAATIYQIDPMINMNQMTPYDFIER

Nucleotide

• Length: 2388 bp

>NTDB_id=611386 LE189_RS10565 WP_002492901.1 2187743..2190130(+) (recD2) [Staphylococcus lugdunensis strain RMLUG6]
ATGGATAACCCTACACTTCTTGAACCGACGATGTTAAAGGGCACCGTCGAAGTTATTTTGTTCCAAAATCAAGATAATTT
CTATACTGTACTTAAAGTTGATACCATTGAATCTAACGAATCGTTCGATACGATGCCAACGGTTGTAGGGTTTTTCCCAA
ATATTGTTGAAGGCGACGTATACACCTTTAAAGGACAGGTTGTTGCGCATCCAAAATATGGCAAACAACTAAAAGCTGAT
ACATTTGAAAAAGAATTACCACAAACGAAAGATGCTATTATTACCTACTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAGACAGCACAAAATATTGTTAATACTTTGGGAGAAAATGCAATAAATGATATTTTAGCTCATCCAGACATATTAACAA
AAGTTTCAAATCTTTCTAAAAAGAAACAAGAGCAAATTGCACAACAAATAGCAGCCAATCAAGAATCAGAAAAAATCATG
ATATACTTACATGATTTAGGGTTTGGCCCTAAACTATCAATGGCAATCTATCAGTTTTATCAAAGTGAAACAATAAACGT
CGTTGATAATAACCCGTATAAACTTGTATATGATATTAAAGGAATTGGATTTAATAAAGCTGATACATTAGCACGTAATA
TCGGCATCGACTTTAATGACCCAGAACGATTAAAAGCTGGCATATTATTCACACTAGAGGAAGAATGTATTAAACAAGGG
CATACTTATTTACCTGCTGAAACAATTCTTAAATCAGCACAAACAATGTTAAGTACGCAAGGGGATGAAATAATTGAAAT
ACATCAACTTGAAGAAATGTTGCAAATTTTAATGGAAGAAGATAAGTTGATTCTTGATCAACAAAAAATTGCCATCCCCA
GTCTTTACTACTCAGAATTAAAAAGCGTACAAAACTTATATCGTATATTAACTCATACCCATAAATTAAATGAACTTGAG
CAATCTGATTTACAGTTGCATATTGGAGAGATAGAAGATAGCAATGAAGTACATTATGCTGCATCACAAAAAGAGGCTTT
ACAAACAGCTATAAACTCAAAAATCATGTTATTAACTGGCGGACCTGGAACTGGTAAGACAACTGTCATTAAAGGTATTG
TAGAGTTATACGCTGAAATTCATGGACTTTCTTTAGATTATGCGGATTACACTGATGATGATTTCCCAGTAGTATTAGCA
GCTCCTACAGGCAGAGCATCGAAACGTTTACAAGAAGCTACTGGCTTAGAGGCAATGACCATCCACCGACTTATAGGATG
GAATCAAGATACACAACCAGAAGACATTTTAGATAATGAAATTAAAGCAAAATTAATTATCATAGATGAAATGTCTATGG
TTGACACTTGGTTATTTCATCAGTTTTTAAATGCGGTACCTTTAGATGCCCAAATTGTATTTGTTGGAGATGAAGACCAA
CTGCCTTCTGTTGGGCCTGGACAAGTATTTAAGGACTTAATCCAGTCTAAAAAAATACCACGTGTCAATTTAACTGAAGT
CTACCGACAACAAGATGGTTCAAGTATTATTGAATTAGCTCACCACATGAAACAAAACGAATCCATAGATATTACAAAAC
GTTATCATGATAGAAGCTTCATTAATTGTAGTGCAGAACAAATTCCTGACGTTGTTAAGAAAGTAGTATCCAGTGCAGTT
AGTAAAGGATATGACATGAGTGATATTCAAGTACTTGCTCCCATGTATAAAGGAAGTGCAGGTATTAAACGTTTAAATCA
AATTCTGCAAACAATTTTAAATCCTAAAGAACCAGACGCCCGTGAAATTGAATTTGGTGATGCTGCATTCCGCAAAGGCG
ATAAAGTATTACAGTTAGTAAATCGTCCTAATGACAATATTTTTAATGGAGATATTGGTATTATTGTTGGCATTTTTTGG
GCAAAAGAAAATGCTTTAAATAAAGATGTTATTATCGTCGATTTTGACGGTAATGAAATTACATTTACACGACAAGACTT
AATTGAATTAACGCATGCATATTGCACTTCGATTCATAAGTCCCAAGGTTCAGAATTCCCAATCGTTATTATGCCCGTAG
TGAAACAATATTTTAGAATGTTACAAAAACCTATTCTTTATACTGGTTTGACTAGAGCTAAACAATCTTTAGTATTACTA
GGGGATCCACAAGCCTTTGACATTGGCCTTAAAACAAATGGTCAAGTTAGAATGACGCAATTATATGATTTATTAGAAGC
ATATTTTGGACACGAAACGCAGAATTCTAATGATGATAATATCATAGCTAAACATAAAAAAGTTACATTATCAGCAGCGA
CAATTTATCAAATAGATCCGATGATCAACATGAATCAAATGACGCCATATGACTTTATTGAACGTTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• AAA domain (AAA_30) (339-544)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

3D structure

• AlphaFold DB: A0A853V584

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.063	100	0.503