Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MBA02_RS27965 Genome accession   NZ_CP101656
Coordinates   6046272..6046697 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain L1a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6041272..6051697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MBA02_RS27950 (MBA02_027950) pilX 6041842..6042429 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  MBA02_RS27955 (MBA02_027955) pilY1 6042441..6045926 (+) 3486 WP_003115287.1 type 4a pilus biogenesis protein PilY1 -
  MBA02_RS27960 (MBA02_027960) pilY2 6045928..6046275 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  MBA02_RS27965 (MBA02_027965) comF 6046272..6046697 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  MBA02_RS27970 (MBA02_027970) ispH 6046744..6047688 (-) 945 WP_003112824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MBA02_RS27975 (MBA02_027975) fkpB 6047774..6048214 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  MBA02_RS27980 (MBA02_027980) lspA 6048207..6048716 (-) 510 WP_003112823.1 signal peptidase II -
  MBA02_RS27985 (MBA02_027985) ileS 6048709..6051540 (-) 2832 WP_003112822.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=611372 MBA02_RS27965 WP_003094721.1 6046272..6046697(+) (comF) [Pseudomonas aeruginosa strain L1a]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=611372 MBA02_RS27965 WP_003094721.1 6046272..6046697(+) (comF) [Pseudomonas aeruginosa strain L1a]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383