Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   NON14_RS09660 Genome accession   NZ_CP101642
Coordinates   1879854..1882217 (-) Length   787 a.a.
NCBI ID   WP_409043460.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HRB10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1874854..1887217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS09635 (NON14_09605) dltC 1876036..1876272 (-) 237 WP_409043458.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  NON14_RS09640 (NON14_09610) dltB 1876302..1877510 (-) 1209 WP_011374105.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  NON14_RS09645 (NON14_09615) dltA 1877503..1879029 (-) 1527 WP_409043459.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  NON14_RS09650 (NON14_09620) - 1879053..1879211 (-) 159 WP_371862895.1 teichoic acid D-Ala incorporation-associated protein DltX -
  NON14_RS09655 (NON14_09625) trxA 1879403..1879714 (-) 312 WP_011374103.1 thioredoxin -
  NON14_RS09660 (NON14_09630) mutS/mutS2 1879854..1882217 (-) 2364 WP_409043460.1 endonuclease MutS2 Machinery gene
  NON14_RS09665 (NON14_09635) - 1882273..1882812 (-) 540 WP_016264660.1 CvpA family protein -
  NON14_RS09670 (NON14_09640) rnhC 1883006..1883923 (+) 918 WP_011374100.1 ribonuclease HIII -
  NON14_RS09675 (NON14_09645) - 1884211..1884522 (-) 312 WP_011374099.1 DUF1292 domain-containing protein -
  NON14_RS09680 (NON14_09650) ruvX 1884572..1885015 (-) 444 WP_011374098.1 Holliday junction resolvase RuvX -
  NON14_RS09685 (NON14_09655) - 1885015..1885275 (-) 261 WP_409043461.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87624.81 Da        Isoelectric Point: 6.0517

>NTDB_id=611005 NON14_RS09660 WP_409043460.1 1879854..1882217(-) (mutS/mutS2) [Latilactobacillus sakei strain HRB10]
MNHKILKTLEYDKIKQMLQGYAITAFGQEQIATLEPINEADLIQIRLNQTKDGVDIERLKGGIPLPQLENIRPHLKRIEI
GAMLNGSELAQIGRVLRATSAVVRFFDDLEKDELELKALPELVAQFVTLPQLTERIRSSVADDGAILDTASTKLRGLRTG
LKQLEGQIRSRMASYTHGAKAKYLSDPIVTIRNDRYVIPVKQEYRGQFGGVVHDQSASGQTLFMEPQAIMELNNRLRQLQ
IEEQQEIERILAELSEAIMPERHNILANAELLGQLDFVNAKAQLAKALKATEPLINAENHVDLKQARHPLIDATKVVAND
IAIGADYQAIVVTGPNTGGKTITLKTLGLVQVMAQSGLFITAREESQVGVFSDIFADIGDEQSIEQNLSTFSAHMENIIQ
ILKQIDDRSLVLLDELGAGTDPQEGSALAIAILDQIGIVGANVVASTHYPELKIYGYNRPQTINASMEFDVATLQPTYRL
LIGVPGRSNAFDISTRLGLPNSIVDQAKQLMNDESQDLNNMITDLENQRKAAETEYQALRHELTEATDLHQQLSTAYQQF
FEDRETEMTKAKEKANAIVEKAEVKADKVITKLRDMQMNQGAQIKENQLIDAKAELGQLHQETTLKKNKVLQRAKRRQTL
KVGDDVLVTSYGQRGTLIRQVDSKNWEVQMGIIKMKIANDDLEKQKVVEDNRPQRHVTTVNSGGARHVKAQLDLRGKRYE
EAMAEVDQYIDAALLANYQQVTIVHGKGTGAIRQGVQEYLQANRQVKKYEYAPANAGGNGATIVTFK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=611005 NON14_RS09660 WP_409043460.1 1879854..1882217(-) (mutS/mutS2) [Latilactobacillus sakei strain HRB10]
ATGAATCATAAAATATTAAAAACATTAGAGTACGATAAAATTAAACAAATGTTGCAAGGTTATGCGATTACAGCATTTGG
TCAAGAACAAATAGCAACTTTAGAACCGATTAATGAAGCAGATCTGATTCAGATTCGCTTAAACCAAACCAAAGATGGTG
TTGATATCGAACGGTTAAAAGGTGGCATTCCATTGCCCCAACTGGAAAATATCAGACCACATTTAAAACGAATTGAAATC
GGTGCGATGTTAAATGGTAGTGAGCTCGCTCAAATCGGGCGCGTTTTACGTGCGACATCTGCCGTGGTTCGTTTCTTTGA
TGACCTGGAAAAAGACGAACTCGAATTAAAAGCCTTACCCGAATTAGTAGCGCAATTTGTCACGTTACCACAATTAACCG
AACGAATTAGAAGTTCGGTGGCTGATGATGGTGCCATTTTAGATACTGCTTCAACCAAGTTACGCGGTTTAAGAACGGGC
TTGAAGCAGTTAGAAGGCCAGATTAGAAGTCGGATGGCCAGCTACACACACGGTGCCAAGGCTAAATATTTAAGTGATCC
GATCGTGACGATTCGCAACGACCGCTACGTGATTCCTGTTAAACAAGAATATCGCGGCCAATTTGGTGGCGTCGTGCATG
ATCAAAGTGCCAGTGGGCAAACCCTATTCATGGAGCCCCAAGCGATTATGGAATTAAATAACCGTTTGCGCCAATTACAA
ATTGAAGAACAACAAGAAATCGAACGGATTTTGGCGGAATTATCAGAAGCTATCATGCCGGAACGTCACAATATTTTAGC
AAATGCTGAATTATTGGGTCAACTCGATTTCGTGAATGCTAAGGCCCAACTTGCGAAAGCTCTAAAAGCAACGGAACCTT
TAATCAATGCGGAAAACCATGTCGATTTAAAACAAGCACGGCATCCTTTAATTGATGCGACTAAAGTCGTGGCCAATGAT
ATTGCAATCGGTGCGGATTATCAAGCGATTGTGGTGACTGGTCCGAATACCGGTGGTAAAACCATCACACTTAAAACATT
GGGCTTAGTCCAAGTGATGGCCCAATCAGGGTTATTCATTACTGCGCGTGAGGAAAGCCAAGTTGGTGTCTTCTCAGATA
TCTTTGCTGATATTGGTGACGAACAATCAATCGAACAAAACTTGAGTACTTTCTCAGCACACATGGAAAATATCATTCAG
ATTCTCAAACAGATTGATGATCGGAGTTTGGTGCTATTAGATGAATTAGGTGCCGGGACTGATCCGCAAGAAGGGTCCGC
TTTAGCGATTGCCATCTTGGATCAAATCGGGATTGTCGGAGCCAACGTGGTTGCGTCAACCCATTATCCTGAATTGAAGA
TTTATGGCTACAATCGACCACAAACAATTAATGCCAGCATGGAATTTGATGTGGCGACTTTACAGCCAACGTACCGTCTT
TTAATTGGGGTACCTGGTCGGAGTAATGCATTTGATATTTCAACGCGCCTAGGCTTACCAAATTCAATCGTCGATCAAGC
GAAACAGTTAATGAACGATGAAAGCCAAGATTTGAACAATATGATTACCGATCTTGAAAATCAACGTAAAGCGGCTGAAA
CAGAATACCAAGCACTACGTCATGAATTGACGGAAGCGACGGATCTACATCAACAACTCTCAACAGCTTATCAACAATTC
TTTGAAGATCGTGAAACGGAAATGACGAAGGCTAAGGAAAAAGCAAATGCGATTGTCGAAAAAGCTGAAGTCAAAGCGGA
TAAAGTCATCACTAAATTGCGTGACATGCAGATGAATCAAGGCGCACAGATTAAGGAAAATCAATTAATCGATGCCAAGG
CTGAATTAGGGCAATTACATCAAGAAACAACCTTGAAGAAAAATAAAGTGCTTCAACGGGCTAAGCGGCGTCAAACGCTG
AAAGTTGGGGATGACGTATTGGTCACGTCTTACGGCCAACGAGGCACTTTAATTCGCCAAGTCGACTCGAAAAATTGGGA
AGTCCAAATGGGCATCATCAAGATGAAGATTGCCAACGACGATTTAGAAAAGCAAAAAGTCGTTGAAGATAACCGACCAC
AACGCCATGTAACAACCGTTAATAGCGGTGGCGCACGCCACGTTAAAGCACAATTGGATTTACGCGGCAAACGCTATGAA
GAAGCAATGGCCGAAGTGGATCAATACATTGATGCGGCGCTATTAGCTAATTATCAACAAGTCACGATTGTCCATGGCAA
AGGGACTGGCGCGATTCGCCAAGGGGTTCAAGAATACCTCCAAGCTAACCGTCAAGTGAAGAAGTACGAATATGCACCAG
CTAATGCTGGTGGGAATGGTGCAACCATTGTGACGTTTAAGTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(642-682)

MutS domain V (MutS_V)

(330-512)

Smr domain (Smr)

(712-787)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

46.447

100

0.465