Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NON14_RS05545 Genome accession   NZ_CP101642
Coordinates   1107517..1109247 (+) Length   576 a.a.
NCBI ID   WP_104964160.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HRB10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102517..1114247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS05505 (NON14_05490) mgsA 1102949..1103371 (+) 423 WP_011374855.1 methylglyoxal synthase -
  NON14_RS05510 (NON14_05495) - 1103455..1104150 (+) 696 WP_112217719.1 YoaK family protein -
  NON14_RS05515 (NON14_05500) - 1104147..1104329 (-) 183 WP_104964163.1 hypothetical protein -
  NON14_RS05520 (NON14_05505) - 1104322..1104642 (-) 321 WP_076632238.1 hypothetical protein -
  NON14_RS05525 (NON14_05510) - 1104663..1105319 (-) 657 WP_076981379.1 type II CAAX endopeptidase family protein -
  NON14_RS05530 (NON14_05515) - 1105520..1105720 (+) 201 WP_004270328.1 cold-shock protein -
  NON14_RS05535 (NON14_05520) - 1105915..1106643 (-) 729 WP_076632240.1 ion transporter -
  NON14_RS05540 (NON14_05525) - 1106849..1107493 (+) 645 WP_112217717.1 TetR/AcrR family transcriptional regulator -
  NON14_RS05545 (NON14_05530) rcrP 1107517..1109247 (+) 1731 WP_104964160.1 ABC transporter ATP-binding protein Regulator
  NON14_RS05550 (NON14_05535) rcrQ 1109247..1111124 (+) 1878 WP_409042956.1 ABC transporter ATP-binding protein Regulator
  NON14_RS05555 (NON14_05540) - 1111222..1112232 (+) 1011 WP_409042958.1 serine hydrolase domain-containing protein -
  NON14_RS05560 (NON14_05545) manA 1112334..1113308 (+) 975 WP_409042960.1 mannose-6-phosphate isomerase, class I -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63636.81 Da        Isoelectric Point: 6.6230

>NTDB_id=610967 NON14_RS05545 WP_104964160.1 1107517..1109247(+) (rcrP) [Latilactobacillus sakei strain HRB10]
MIKLAKKRMSGLAVFGAVLFMVIQVVSNLYLPNLTSDIVNNGIAKGDIDYIWQAGFKMLGFSLISILAAICNVYLAAKTS
QGLGQKLRSDIYRKVINFSHDEMDQVGTSSLITRTTNDVVQIQNVAMMFLRMMIMAPIMLVGASFLAYQKNAQLTSIFVV
VLPLMAIFIGVVMYFAVPLFKAMQKKTDRINLVFREGLTGVRVIRAFRRDKFEQERFDDANLDYTQNAKKVYSIMSVMLP
VMTLIMSGTNIAITWMGGHLIADQAMQVGNLLAFMTYAMQILMSFMMLSMVFVFIPRAQASAVRINEVLDLQTPIENPEN
PKSFTDQAVSLAFDNVNFRYQNAEKLALEKIDFQASAGQTVAIIGGTGSGKSTLVNLIPRFYDVEAGQVQVDGLNVKDVT
LHDIHEQVAFVPQKANLFTGTIRENMQYGNPAATDDQIWHALEIAQSKDFVSELDGGLDSHVEQGGGNFSGGQRQRLAIA
RALVKRASVYVFDDSFSALDFKTDALLRKALKEDAEIQKSVVVIVGQRVSTVADADTILVLDEGQMVGKGTHAQLKATNA
TYQEIINSQIREGDEA

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=610967 NON14_RS05545 WP_104964160.1 1107517..1109247(+) (rcrP) [Latilactobacillus sakei strain HRB10]
ATGATTAAACTTGCAAAAAAGAGAATGTCAGGCTTAGCCGTTTTTGGTGCTGTCTTATTCATGGTCATTCAAGTTGTTAG
TAACTTGTATCTCCCTAATTTGACGTCTGATATTGTTAATAATGGGATTGCCAAAGGCGATATTGATTATATCTGGCAAG
CCGGCTTCAAAATGCTCGGCTTTTCATTGATCAGTATTTTAGCCGCAATCTGTAACGTTTATTTAGCTGCTAAGACATCA
CAAGGTCTGGGCCAAAAATTACGATCAGATATTTATCGAAAAGTCATCAATTTCTCCCATGATGAAATGGACCAAGTGGG
GACCTCTTCACTGATTACCCGGACGACCAATGATGTTGTTCAAATTCAAAATGTGGCGATGATGTTCTTACGAATGATGA
TCATGGCCCCTATTATGTTGGTTGGTGCCAGCTTTTTGGCTTACCAAAAGAATGCCCAATTAACATCAATTTTCGTCGTT
GTCTTACCATTAATGGCAATCTTCATCGGTGTTGTGATGTATTTTGCCGTACCGCTCTTTAAGGCGATGCAAAAGAAGAC
TGATCGGATTAATTTGGTTTTCCGTGAAGGCTTAACCGGGGTCCGGGTAATCCGTGCATTCCGGCGCGATAAGTTCGAAC
AAGAACGTTTTGACGACGCGAACTTAGATTACACACAAAATGCTAAAAAAGTCTACAGTATCATGTCTGTCATGTTACCT
GTGATGACATTGATTATGAGTGGGACAAACATTGCCATCACTTGGATGGGTGGTCACTTAATTGCTGATCAAGCTATGCA
AGTGGGGAATTTATTGGCCTTCATGACTTATGCGATGCAAATCTTAATGAGTTTCATGATGCTTTCAATGGTTTTCGTCT
TCATTCCACGGGCACAAGCATCAGCTGTTCGGATTAATGAAGTCTTAGATTTACAAACCCCAATTGAAAATCCAGAAAAT
CCCAAAAGTTTTACAGATCAAGCTGTCAGCTTAGCCTTTGATAATGTTAACTTCCGCTACCAAAATGCAGAAAAATTAGC
CTTAGAAAAGATTGATTTTCAAGCGTCTGCTGGTCAAACCGTTGCGATTATCGGGGGGACTGGTTCAGGGAAATCAACCT
TGGTGAACTTGATTCCGCGTTTTTACGACGTTGAAGCCGGCCAAGTCCAAGTTGATGGGTTGAACGTCAAAGATGTGACG
TTACATGATATTCATGAACAAGTCGCATTTGTACCGCAAAAAGCCAATCTCTTTACAGGAACGATTCGCGAAAATATGCA
ATATGGGAATCCGGCTGCAACTGATGATCAGATCTGGCATGCACTTGAAATTGCCCAATCAAAGGATTTCGTTAGCGAAC
TCGATGGTGGCTTAGACAGTCACGTTGAACAAGGTGGCGGTAACTTCTCAGGTGGTCAACGCCAACGCTTAGCGATCGCC
CGGGCATTAGTTAAACGCGCATCAGTTTATGTCTTTGATGATTCATTTTCAGCTTTAGATTTCAAGACAGATGCACTTTT
ACGCAAAGCCTTGAAAGAAGATGCTGAAATTCAAAAGAGTGTCGTCGTCATCGTTGGCCAACGGGTCTCAACGGTAGCTG
ACGCCGACACAATCTTGGTCTTAGATGAAGGTCAAATGGTTGGTAAAGGGACACATGCCCAATTAAAAGCAACCAATGCA
ACTTACCAAGAAATTATCAATTCACAAATCAGAGAGGGGGATGAAGCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(348-495)

ABC transporter transmembrane region (ABC_membrane)

(15-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.73

97.917

0.418