Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LA387_RS07640 Genome accession   NZ_CP084377
Coordinates   1495254..1496045 (-) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus garvieae strain Lg-Granada     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490254..1501045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA387_RS07620 - 1490529..1491884 (+) 1356 WP_207144482.1 MATE family efflux transporter -
  LA387_RS07625 gatB 1491897..1493330 (-) 1434 WP_003133637.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  LA387_RS07630 gatA 1493332..1494804 (-) 1473 WP_003133636.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LA387_RS07635 gatC 1494804..1495109 (-) 306 WP_003133635.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LA387_RS07640 codY 1495254..1496045 (-) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LA387_RS07645 - 1496182..1497780 (-) 1599 WP_003133633.1 hypothetical protein -
  LA387_RS07650 - 1497920..1498243 (-) 324 WP_003133632.1 DUF1292 domain-containing protein -
  LA387_RS07655 ruvX 1498258..1498686 (-) 429 WP_003133630.1 Holliday junction resolvase RuvX -
  LA387_RS07660 - 1498686..1498952 (-) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  LA387_RS07665 - 1499153..1500064 (-) 912 WP_003133628.1 aldo/keto reductase -
  LA387_RS07670 rpmH 1500213..1500347 (-) 135 WP_003135255.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=610866 LA387_RS07640 WP_003133634.1 1495254..1496045(-) (codY) [Lactococcus garvieae strain Lg-Granada]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=610866 LA387_RS07640 WP_003133634.1 1495254..1496045(-) (codY) [Lactococcus garvieae strain Lg-Granada]
GTGGCTACTTTATTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTGATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACGATTAACGAACCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCAAATGGTTTAACAACATGTGCACCAATCTATGGTAGTGGTATGCGCTTGGGAACATTTATCTTAT
GGCGTACAGACGGGAAATTCAGTGATGATGACCTTGTGCTTGCAGAACTTGCAACAACAGTTATCGGTGTTCAACTTTCC
AATCTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCCAATATGGCAGTCAATACACTTTCATATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACACGTTATCGCTTCAGTCATTGCCGATA
AGATTGGCATTACCCGTTCAGTAATCGTTAATGCACTGCGTAAGCTTGAATCTGCCGGTGTTATTGAAAGTCGTTCGTTG
GGAATGAAAGGAACTTACCTCAAAGTTCTCAACCAAGGTTTGTTTACAAAACTTGAAGGCCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483