Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KB553_RS11030 Genome accession   NZ_CP084347
Coordinates   2429650..2430303 (+) Length   217 a.a.
NCBI ID   WP_225719124.1    Uniprot ID   -
Organism   Chryseobacterium rhizoplanae strain XL97     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2424650..2435303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB553_RS11015 (KB553_11015) aceA 2425054..2426337 (-) 1284 WP_378113024.1 isocitrate lyase -
  KB553_RS11020 (KB553_11020) aceB 2426416..2427990 (-) 1575 WP_225719123.1 malate synthase A -
  KB553_RS11025 (KB553_11025) - 2428117..2429589 (+) 1473 WP_123868403.1 helix-turn-helix domain-containing protein -
  KB553_RS11030 (KB553_11030) comF 2429650..2430303 (+) 654 WP_225719124.1 ComF family protein Machinery gene
  KB553_RS11035 (KB553_11035) - 2430423..2431109 (+) 687 WP_123868405.1 alpha/beta fold hydrolase -
  KB553_RS11040 (KB553_11040) upp 2431112..2431762 (-) 651 WP_123868406.1 uracil phosphoribosyltransferase -
  KB553_RS11045 (KB553_11045) der 2431912..2433222 (-) 1311 WP_123868407.1 ribosome biogenesis GTPase Der -
  KB553_RS11055 (KB553_11055) - 2433676..2434596 (-) 921 WP_225719234.1 transposase -
  KB553_RS11060 (KB553_11060) - 2434634..2434987 (-) 354 WP_225716639.1 transposase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25473.52 Da        Isoelectric Point: 8.8342

>NTDB_id=610673 KB553_RS11030 WP_225719124.1 2429650..2430303(+) (comF) [Chryseobacterium rhizoplanae strain XL97]
MILDLLFPNRCLHCNRIIEANLLVCDLCFRQIHFTHYDYSKNNPVKEQCKLFFPVENTYALFQFEEDSLSRKIIHELKYR
NREITGKILAEWTTERLAFKDQKPDLLVSVPLHPKKLRERGYNQLHLYTETLSKYYDIPFDNQLIKRNHYSKAQALKDKK
HRLETVNTFSVTQPITGKHILLIDDVFTTGTTVSSIAWEILNAGKNKVSVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=610673 KB553_RS11030 WP_225719124.1 2429650..2430303(+) (comF) [Chryseobacterium rhizoplanae strain XL97]
ATGATATTAGACTTACTCTTTCCCAACCGCTGCCTTCACTGCAACAGAATTATTGAGGCTAATCTTCTGGTTTGTGACCT
TTGTTTTAGACAGATTCACTTTACGCACTATGATTATTCCAAAAACAATCCGGTTAAAGAACAATGCAAACTCTTTTTCC
CCGTTGAGAATACTTATGCCCTTTTTCAGTTTGAAGAGGACAGTTTAAGCAGGAAAATCATTCATGAACTGAAATACAGA
AATAGAGAAATCACCGGAAAAATACTTGCAGAATGGACTACTGAACGATTGGCTTTTAAAGATCAGAAACCAGATCTTTT
GGTAAGTGTTCCGCTTCATCCTAAAAAATTAAGAGAAAGAGGTTATAACCAACTTCATTTATATACAGAAACTCTTTCAA
AATACTATGATATCCCATTTGACAATCAATTAATCAAGAGAAACCATTACTCCAAAGCCCAAGCCCTGAAGGATAAGAAG
CATAGGCTTGAAACGGTTAACACTTTTTCGGTCACCCAGCCAATCACAGGAAAACATATTCTTCTGATTGATGATGTTTT
TACAACAGGAACTACTGTTTCATCTATTGCCTGGGAGATTTTAAATGCCGGTAAGAATAAAGTAAGTGTACTGGTCATGG
CGATGGATGTATAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

50.463

99.539

0.502