Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   M493_RS12420 Genome accession   NC_022080
Coordinates   2485335..2487692 (-) Length   785 a.a.
NCBI ID   WP_041267971.1    Uniprot ID   -
Organism   Geobacillus genomosp. 3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2480335..2492692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M493_RS12395 (M493_13350) ahpC 2480830..2481393 (-) 564 WP_020960702.1 alkyl hydroperoxide reductase subunit C -
  M493_RS18720 (M493_13355) - 2481752..2481925 (-) 174 WP_020960703.1 hypothetical protein -
  M493_RS12405 (M493_13360) dtd 2482006..2482464 (-) 459 WP_020960704.1 D-aminoacyl-tRNA deacylase -
  M493_RS12410 (M493_13365) - 2482487..2484685 (-) 2199 WP_020960705.1 RelA/SpoT family protein -
  M493_RS12415 (M493_13370) - 2484823..2485335 (-) 513 WP_020960706.1 adenine phosphoribosyltransferase -
  M493_RS12420 (M493_13375) recJ 2485335..2487692 (-) 2358 WP_041267971.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  M493_RS12425 (M493_13380) - 2487750..2488652 (-) 903 WP_020960708.1 cation diffusion facilitator family transporter -
  M493_RS12430 (M493_13385) secDF 2488777..2491029 (-) 2253 WP_020960709.1 protein translocase subunit SecDF -
  M493_RS12435 (M493_13390) - 2491149..2491439 (-) 291 WP_020960710.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 86153.59 Da        Isoelectric Point: 5.9974

>NTDB_id=61059 M493_RS12420 WP_041267971.1 2485335..2487692(-) (recJ) [Geobacillus genomosp. 3]
MLKAKTRWEVDGPDEQTVRRLAGEAGLAPLLARLLARRGVRTAAEAAAFLNPLGQPFHDPFLLDGMERAIRRLKRAIEAG
ELVLVYGDYDADGVCSTSVMVSALREAGASVEFYIPNRFTEGYGPNLAAFRAAKERGVSVIVTVDNGIAAVNEIAAANEW
GLDVIVTDHHEPGPVLPEAYAIIHPKKPGSTYPFRDLAGVGVAFKVAHALLGQVPRHLLDLVAIGTIADLVPLVGENRLL
AAQGLEALRETKRAGLRALWRQCRIDAATVNEQTVGFAIAPRLNAAGRLGGADPAVALLMTDDEDEAVRLAQEMDELNRE
RQQLVAQIAEEAAEMVRRRFPPDEHRVLVVAGEGWNPGVVGIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIQGFDLF
ASLSQCRDILPHFGGHPMAAGMTLALDDVEKLRERLNAIAARTLSDDDFTPPTFIDAACSVAELTLSAARGLERLAPFGV
GNPRPLLLIEEAAVETMRRVGANGAHMKAAFSQDGAAIDAIGFGLGPLCEEIAPGARVSVVGELAVNEWNGLARPQLSLC
DVAVSSCQLFDARGCRDVRPLLERLPEEKRLLVLFRRETGHRADLATFRRELHYVSNDEEAGALAIDGRYVVLLDLPPKI
SRLAALLGNGQPERIYAVFAQPEAQFFRTFPTRDHFKWFYALLHKYRSFPLAERGGQLARARGWTEETVYFMAKVFLELE
FITEQNGVISLVHTPAKRDLHESPTYCRRRDELEAEHQLLYSTYEQLKRCLAAMTRSQTYEEANV

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=61059 M493_RS12420 WP_041267971.1 2485335..2487692(-) (recJ) [Geobacillus genomosp. 3]
ATGTTAAAAGCGAAAACGCGTTGGGAGGTAGATGGTCCCGACGAACAGACGGTGCGGCGGCTGGCAGGGGAAGCCGGCCT
CGCGCCGTTGTTGGCCAGGCTTCTTGCCCGCCGCGGCGTGCGGACGGCGGCGGAAGCGGCCGCGTTTCTCAATCCGCTTG
GGCAGCCGTTTCACGATCCGTTTCTGCTTGATGGGATGGAGCGGGCTATCCGGCGCCTTAAGCGGGCGATCGAGGCCGGC
GAACTTGTGCTTGTTTATGGCGATTATGACGCCGATGGTGTCTGCAGTACGTCGGTGATGGTCAGCGCTCTTAGAGAAGC
GGGGGCGTCGGTTGAGTTCTACATTCCCAACCGCTTTACGGAAGGATACGGCCCGAATCTGGCGGCGTTCCGTGCCGCGA
AAGAGCGGGGCGTTTCCGTGATTGTGACTGTCGACAACGGGATTGCCGCGGTCAATGAAATCGCCGCCGCTAACGAATGG
GGGCTTGATGTCATTGTGACCGACCATCATGAACCCGGTCCGGTGCTGCCGGAGGCGTACGCGATCATTCATCCGAAAAA
GCCGGGAAGTACATACCCGTTTCGCGACCTGGCCGGTGTCGGTGTGGCGTTTAAAGTCGCCCATGCGTTGCTCGGGCAGG
TGCCGCGTCATTTGCTTGATTTGGTGGCGATCGGGACGATTGCCGACCTAGTGCCACTCGTGGGGGAAAACCGTCTGCTT
GCCGCGCAGGGCCTTGAAGCGCTGCGTGAAACGAAACGCGCCGGGTTGCGTGCCCTATGGCGGCAATGCCGCATTGATGC
GGCGACGGTAAACGAGCAGACGGTCGGCTTTGCCATCGCGCCGCGGCTGAATGCAGCCGGCCGCCTCGGCGGCGCTGATC
CGGCCGTGGCGCTGTTAATGACTGACGATGAGGACGAAGCGGTCCGGTTGGCTCAAGAAATGGACGAACTAAATCGCGAG
CGTCAGCAGCTTGTAGCGCAAATAGCTGAAGAAGCGGCCGAGATGGTGCGGCGCCGGTTTCCGCCTGACGAGCATCGCGT
TCTTGTTGTGGCCGGTGAAGGATGGAATCCGGGTGTTGTCGGCATCGTCGCCTCGAAGCTTGTCGAGCAGTTTTACCGTC
CGGCGGTTGTACTTTCGATCGATCGGGAAAAAGGAATCGCCAAAGGATCAGCCCGCAGCATTCAAGGCTTTGACCTTTTT
GCCAGTCTGTCGCAATGCCGCGATATCTTGCCGCATTTTGGCGGCCATCCGATGGCGGCGGGAATGACCTTGGCGCTTGA
TGATGTAGAGAAGCTGCGGGAGCGGTTGAATGCCATCGCGGCGAGGACGTTGTCGGATGATGATTTTACGCCGCCGACGT
TCATCGATGCTGCCTGTTCCGTTGCGGAGTTGACGTTGTCGGCCGCCCGCGGGCTTGAACGGCTTGCTCCGTTTGGCGTC
GGCAATCCGCGGCCGCTTCTGCTCATTGAGGAGGCGGCGGTTGAAACGATGCGGCGCGTCGGGGCGAACGGCGCCCATAT
GAAAGCCGCCTTTTCCCAAGACGGCGCAGCGATTGATGCCATTGGTTTCGGCCTTGGACCGCTCTGCGAGGAAATCGCCC
CAGGGGCGCGCGTCTCGGTCGTCGGGGAGCTTGCGGTGAACGAATGGAACGGGCTGGCACGGCCGCAGCTGTCGTTATGT
GATGTAGCGGTAAGCAGCTGTCAGCTGTTTGATGCCCGCGGCTGCCGCGACGTCCGCCCGCTTCTCGAGCGGCTGCCGGA
AGAGAAGCGGCTGCTCGTCCTGTTTCGCCGCGAAACTGGACATCGTGCAGATTTGGCGACGTTTCGCCGCGAACTTCATT
ATGTGTCAAATGATGAAGAGGCGGGCGCCTTGGCGATTGACGGCCGCTATGTTGTGCTGCTTGACTTGCCGCCAAAGATC
AGCCGGCTTGCCGCCCTGCTTGGCAACGGGCAGCCGGAGCGCATTTACGCGGTGTTCGCACAGCCGGAAGCGCAGTTTTT
CCGCACGTTCCCGACGCGCGACCATTTTAAATGGTTTTATGCCCTTTTGCATAAATATCGTTCGTTTCCGCTCGCCGAGC
GGGGCGGACAATTGGCGCGCGCCCGCGGCTGGACGGAAGAGACGGTTTATTTTATGGCAAAAGTGTTTTTAGAGCTGGAG
TTTATTACGGAACAAAACGGCGTCATTTCGCTCGTTCATACGCCGGCGAAGCGCGACTTGCATGAATCGCCGACATACTG
CCGCCGGCGGGACGAGCTTGAGGCGGAACATCAGTTATTATATTCCACTTACGAGCAGTTGAAACGCTGCTTAGCAGCAA
TGACACGTTCGCAAACGTACGAGGAGGCAAACGTATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(310-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

RecJ OB domain (RecJ_OB)

(455-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.746

99.745

0.526

Multiple sequence alignment