Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   M493_RS12335 Genome accession   NC_022080
Coordinates   2465549..2467912 (-) Length   787 a.a.
NCBI ID   WP_020960690.1    Uniprot ID   S5ZR60
Organism   Geobacillus genomosp. 3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2460549..2472912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M493_RS12315 (M493_13255) alaS 2460553..2463189 (-) 2637 WP_020960686.1 alanine--tRNA ligase -
  M493_RS12320 (M493_13260) - 2463509..2464570 (-) 1062 WP_020960687.1 AI-2E family transporter -
  M493_RS17785 (M493_13265) - 2464696..2464830 (-) 135 WP_020960688.1 YrzQ family protein -
  M493_RS12325 (M493_13270) - 2464842..2465033 (-) 192 WP_008881018.1 hypothetical protein -
  M493_RS12330 (M493_13275) - 2465049..2465522 (-) 474 WP_020960689.1 PRC-barrel domain-containing protein -
  M493_RS12335 (M493_13280) recD2 2465549..2467912 (-) 2364 WP_020960690.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M493_RS12340 (M493_13285) - 2467932..2468594 (-) 663 WP_020960691.1 tetratricopeptide repeat protein -
  M493_RS12345 (M493_13290) mnmA 2468713..2469828 (-) 1116 WP_020960692.1 tRNA 2-thiouridine(34) synthase MnmA -
  M493_RS12350 (M493_13295) - 2469843..2470985 (-) 1143 WP_020960693.1 cysteine desulfurase family protein -
  M493_RS12355 (M493_13300) cymR 2471008..2471424 (-) 417 WP_011232042.1 cysteine metabolism transcriptional regulator CymR -
  M493_RS12360 (M493_13305) - 2471435..2472085 (-) 651 WP_020960694.1 YczE/YyaS/YitT family protein -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 86093.46 Da        Isoelectric Point: 5.0211

>NTDB_id=61058 M493_RS12335 WP_020960690.1 2465549..2467912(-) (recD2) [Geobacillus genomosp. 3]
MQEQQSLALDGRTFIKGACLGVIFHNEETLYTVVRIRVEETNEAAVEEEVVVTGYFPRLNEGDVYVFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIHYLSSGLFKGIGKKTATAIVEALGENAIAVILRDPEALLRVPKLTKQKAKQLYETLCAHEGL
EQTMIALTQLGFGPQLAMKIYQAYGEETMDIIHENPYQLVEDIEGIGFGRADDLGRQLGISGSHPARLRAACLFVLEQVC
LQEGHVYMKEEELVSRIGELLGGNPNGAVDGQAIGQTLLMLSEEGKLIVEQGRYYLPSLYFAEKGIAANIRRLLGQTPPS
ASFPESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLFILTGGPGTGKTTVIKGIVELFASLNGVSLDPAHYKSGEPF
PVLLAAPTGRAAKRMSEATGLPSATIHRLLGWNGAEGFSHDEHEPIAGKLLVVDEVSMVDTWLANQLLKAVPDGMQVIFV
GDEDQLPSVGPGQVLRDLLESGVIPSVRLTEVYRQAEGSSIIGLAHAMKRGVVPADLTAPKADRSFIRCRAGQVADVVRQ
IADNARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQGLFNPPADGKRELSIGDVVYRVGDKVLQLVNQPEDNVFNGDIGE
VVAIFYAKENTEKQDLLVVSFDGIEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFRFGVAQRGDGARQTALAEKLAAAAAPFVEGELPLEDADIGMENVTPYDFMGDESS

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=61058 M493_RS12335 WP_020960690.1 2465549..2467912(-) (recD2) [Geobacillus genomosp. 3]
GTGCAAGAGCAGCAATCGCTCGCGCTCGACGGACGTACGTTTATTAAAGGGGCATGTTTAGGTGTTATTTTCCACAATGA
GGAAACCTTATATACTGTCGTCCGCATCCGCGTGGAAGAAACGAACGAAGCGGCTGTCGAGGAAGAAGTGGTTGTCACCG
GCTATTTTCCTCGTTTGAATGAAGGGGATGTGTACGTCTTTTACGGACAGTTCCGCCAACATCCGCGCTTTGGCCGCCAG
TATGCGGCCGAGCAGTTCCGCAAACAGCTTCCGAATACGAAAGAAGGAGTCATTCATTATTTGTCAAGCGGCTTGTTTAA
AGGGATCGGTAAAAAAACGGCGACAGCGATTGTTGAGGCGCTCGGCGAAAACGCGATCGCCGTGATTTTGCGCGATCCGG
AGGCGCTTTTGCGCGTGCCGAAGCTGACGAAGCAAAAGGCGAAACAGTTGTATGAAACACTCTGCGCCCATGAAGGGCTC
GAACAGACCATGATCGCTCTCACCCAGCTCGGCTTTGGCCCGCAGCTGGCGATGAAAATTTACCAGGCATACGGCGAAGA
GACGATGGATATCATTCATGAAAATCCGTACCAGCTCGTCGAAGACATTGAAGGGATCGGTTTTGGCCGCGCTGATGACC
TCGGGCGCCAGCTCGGCATTTCCGGCAGCCATCCGGCCCGGCTGCGCGCCGCCTGCCTGTTTGTCCTTGAGCAGGTATGC
TTGCAAGAAGGTCACGTCTATATGAAGGAGGAAGAGCTCGTCAGCCGCATTGGCGAACTGCTTGGCGGGAACCCGAACGG
GGCGGTCGATGGACAAGCCATCGGACAGACGCTCCTGATGTTAAGCGAAGAAGGAAAGCTGATCGTGGAACAAGGACGTT
ATTATCTTCCCTCGCTTTACTTCGCCGAAAAGGGGATCGCCGCCAACATTCGGCGGTTGCTCGGGCAAACGCCGCCATCG
GCCTCATTTCCTGAGTCGGAGTTTTTGCTGGCGCTTGGGGCGCTCGAGGAGCGGCTCGGAATGCAATACGCCCCCCAGCA
AAAAGAGGCGATCCAACGGGCGCTTTCATCACCGCTTTTCATTTTAACGGGGGGGCCGGGAACCGGAAAAACAACGGTGA
TTAAAGGGATCGTTGAGCTGTTTGCCTCTCTAAACGGTGTATCGCTCGATCCCGCCCATTACAAAAGCGGCGAGCCGTTT
CCGGTGCTGCTCGCCGCTCCGACCGGCCGGGCGGCAAAGCGGATGAGCGAAGCGACTGGGCTGCCGTCGGCGACGATTCA
CCGGCTGCTTGGCTGGAACGGAGCGGAAGGGTTCAGCCATGATGAACATGAGCCGATTGCCGGCAAGCTGCTTGTCGTTG
ATGAAGTGTCAATGGTCGATACATGGTTGGCCAATCAGCTGTTAAAGGCAGTGCCGGACGGGATGCAAGTCATTTTTGTG
GGCGACGAAGATCAGCTTCCGTCCGTCGGACCAGGCCAAGTGTTGAGAGATTTGCTCGAGTCAGGCGTTATCCCGTCGGT
GCGGCTGACCGAGGTGTATCGCCAAGCGGAAGGATCGTCGATCATCGGGCTCGCCCACGCGATGAAGCGCGGCGTCGTGC
CGGCTGACTTAACCGCCCCGAAGGCGGATCGCTCCTTTATTCGCTGCCGCGCCGGACAAGTGGCGGATGTCGTCCGGCAA
ATTGCTGACAACGCACGCAACAAAGGGTTTTCCGTCAAAGACATTCAAGTGCTCGCTCCGATGTACCGCGGCCCGGCCGG
CATCGATCAGCTAAACAAAGTGCTGCAGGGGCTGTTCAATCCCCCGGCTGACGGGAAGCGGGAGCTTTCGATCGGCGATG
TGGTGTATCGTGTCGGCGATAAAGTGCTGCAGCTCGTCAATCAGCCGGAAGACAACGTGTTTAACGGCGATATCGGTGAA
GTCGTCGCCATTTTTTACGCCAAAGAAAATACAGAAAAGCAAGACTTGCTCGTCGTCTCGTTTGATGGCATTGAAGTGAC
GTACACAAGACAAGACTTGGCGCAAATTACCCATGCGTATTGCTGCTCGGTCCATAAGGCGCAAGGGAGCGAATTTCCGA
TCGTCATTTTACCTGTCGTCAAAAGTTATTACCGGATGTTGAAGCGGAATTTGCTGTATACGGCAGTGACGAGAAGCAAG
CAATTTCTCATTTTGTGTGGCGAGGAAGAAGCGTTTCGGTTCGGTGTTGCCCAGCGGGGCGACGGAGCGCGCCAGACGGC
GCTTGCCGAAAAGCTGGCGGCTGCGGCTGCGCCGTTTGTCGAAGGTGAGCTGCCGCTTGAAGATGCGGACATCGGGATGG
AAAACGTTACGCCGTATGACTTTATGGGCGATGAGTCAAGCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

AAA domain (AAA_30)

(342-549)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

Helix-hairpin-helix domain (HHH_5)

(107-153)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S5ZR60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.226

100

0.61

Multiple sequence alignment