Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   NMG40_RS26495 Genome accession   NZ_CP101325
Coordinates   5757066..5757590 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain LG2-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5752066..5762590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG40_RS26480 aroB 5753182..5754288 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  NMG40_RS26485 aroK 5754338..5754856 (-) 519 WP_003095833.1 shikimate kinase AroK -
  NMG40_RS26490 pilQ 5754868..5757012 (-) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  NMG40_RS26495 comL/pilP 5757066..5757590 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  NMG40_RS26500 pilO 5757587..5758210 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  NMG40_RS26505 pilN 5758207..5758803 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  NMG40_RS26510 pilM 5758803..5759867 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  NMG40_RS26515 - 5760052..5762523 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=610567 NMG40_RS26495 WP_003095836.1 5757066..5757590(-) (comL/pilP) [Pseudomonas aeruginosa strain LG2-2]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=610567 NMG40_RS26495 WP_003095836.1 5757066..5757590(-) (comL/pilP) [Pseudomonas aeruginosa strain LG2-2]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362