Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LDH92_RS00890 Genome accession   NZ_CP084315
Coordinates   204433..206268 (+) Length   611 a.a.
NCBI ID   WP_225557235.1    Uniprot ID   -
Organism   Bifidobacterium animalis subsp. lactis strain 19-D-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 199433..211268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDH92_RS00875 (LDH92_00875) - 200660..201474 (-) 815 Protein_168 ABC transporter ATP-binding protein -
  LDH92_RS00880 (LDH92_00880) - 201777..202370 (+) 594 WP_004218469.1 MarR family winged helix-turn-helix transcriptional regulator -
  LDH92_RS00885 (LDH92_00885) rcrP 202442..204361 (+) 1920 WP_004218470.1 ABC transporter ATP-binding protein Regulator
  LDH92_RS00890 (LDH92_00890) rcrQ 204433..206268 (+) 1836 WP_225557235.1 ABC transporter ATP-binding protein Regulator
  LDH92_RS00895 (LDH92_00895) - 206282..207808 (-) 1527 WP_130077102.1 polysaccharide deacetylase family protein -
  LDH92_RS00900 (LDH92_00900) - 208174..208863 (-) 690 WP_225557016.1 phosphatase PAP2 family protein -
  LDH92_RS00905 (LDH92_00905) - 208939..209574 (+) 636 WP_004218474.1 sugar O-acetyltransferase -
  LDH92_RS00910 (LDH92_00910) - 209665..210084 (+) 420 WP_004218476.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67103.40 Da        Isoelectric Point: 5.2492

>NTDB_id=610552 LDH92_RS00890 WP_225557235.1 204433..206268(+) (rcrQ) [Bifidobacterium animalis subsp. lactis strain 19-D-1]
MGHGRAGAPMEKADDFGGALKELMRFSKRYIPAIVIALILGVGGAICQIIGPDYLGDMTDEITKGLPALVHGKPVLRSID
MTAVTRIGWTLVALYVGYALLSYVQSWMMATVTQRTAQRLRAAIDVKMNKLPLKYFDEHSTGDVMSRITNDVDAVGQTLG
QSLGTLISSVTLFVGSLVMMFANNWILALCAVGASLLGMVLMLVVMRFSQKYFVKQQMALGGVNGHVEEMYSGHTVVKAF
GGEADAIRRFERYNNDLYDSGWKSQFISGLMMPMMNLVGNLGYVVVCVVGAALAMNGSIEFGVIVAFMLYIRLFTQPLSQ
FAQAFQNLQRCAAGSERVFTFLDEPELADESDKQPLLGYGSNGEITPVEGRVSFEHVKFGYEPNKLVIHDFSADVEPGQK
VAIVGPTGAGKTTMVNLLMRFYEIAGGKISIDGIDTKSVPRWNVHDQFSMVLQDTWVFNGTVRENVAYAKEDVTDEQVVA
ACRAVGLDRYIRSLPNGYDTVLDESATLSQGQKQLLTIARAMVQDSPILILDEATSSVDTRTEELIQTAMDKLTEGRTSF
VIAHRLSTIRDADMILVMRDGDIVERGTHEELLAKHGFYADIYNAQFTLAQ

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=610552 LDH92_RS00890 WP_225557235.1 204433..206268(+) (rcrQ) [Bifidobacterium animalis subsp. lactis strain 19-D-1]
ATGGGACATGGGCGTGCAGGCGCGCCCATGGAGAAAGCCGATGATTTCGGCGGCGCGCTCAAGGAACTGATGCGCTTCAG
CAAGCGCTACATACCGGCGATCGTCATCGCGCTGATCCTCGGCGTCGGCGGCGCGATCTGCCAGATCATAGGGCCGGACT
ACCTCGGCGATATGACCGACGAAATCACCAAGGGACTGCCTGCGCTCGTGCACGGCAAGCCGGTGCTGCGTTCGATCGAC
ATGACCGCGGTGACGCGCATCGGATGGACGCTCGTGGCGCTCTACGTGGGCTACGCACTGCTCTCATACGTGCAGAGCTG
GATGATGGCCACCGTCACGCAGCGCACGGCGCAACGCCTGCGCGCGGCCATCGACGTGAAGATGAACAAGCTGCCGCTCA
AATACTTCGACGAGCACAGCACCGGCGACGTGATGAGCCGCATCACGAACGACGTGGACGCGGTGGGCCAGACGCTCGGG
CAGTCCCTCGGCACGCTCATCTCGTCGGTCACGCTGTTCGTGGGCTCGCTCGTCATGATGTTCGCGAACAACTGGATCCT
GGCATTGTGCGCAGTGGGCGCGAGCCTGCTCGGCATGGTGCTCATGCTCGTCGTGATGAGGTTCTCGCAGAAGTACTTCG
TCAAGCAGCAGATGGCGCTCGGCGGCGTGAACGGCCATGTGGAGGAGATGTACAGCGGGCACACCGTGGTCAAGGCCTTC
GGCGGCGAGGCCGATGCGATCCGCAGATTCGAACGCTACAACAACGACCTGTACGACTCGGGATGGAAGAGCCAGTTCAT
CTCGGGCCTCATGATGCCAATGATGAACCTCGTGGGCAACCTCGGCTACGTCGTCGTGTGCGTGGTCGGCGCGGCGCTCG
CGATGAACGGCTCGATCGAATTCGGCGTGATCGTGGCGTTCATGCTCTACATTCGCCTGTTCACGCAACCGCTCTCGCAG
TTCGCGCAGGCGTTCCAGAATCTGCAACGCTGCGCCGCGGGCTCCGAACGGGTGTTCACCTTCCTCGACGAACCCGAGCT
CGCCGACGAGTCCGACAAGCAGCCATTGCTCGGCTACGGCAGCAACGGCGAGATCACGCCCGTCGAAGGCCGTGTGAGCT
TCGAGCACGTGAAATTCGGGTACGAGCCGAACAAGCTCGTCATCCACGATTTCTCGGCGGACGTGGAGCCTGGGCAGAAA
GTGGCGATCGTGGGGCCCACCGGCGCGGGCAAGACGACGATGGTGAATCTGCTCATGCGATTCTACGAGATCGCCGGCGG
GAAGATCTCGATCGACGGCATCGACACGAAGAGCGTGCCGCGTTGGAACGTGCACGACCAGTTCTCGATGGTGCTGCAGG
ACACCTGGGTGTTCAACGGCACCGTGCGCGAGAACGTGGCGTATGCGAAGGAAGACGTGACCGACGAGCAGGTGGTCGCC
GCCTGCCGTGCCGTGGGACTCGACCGTTACATCCGCTCGCTGCCAAACGGCTACGACACCGTGCTCGACGAGTCGGCCAC
GTTGTCGCAGGGGCAGAAGCAGCTGCTGACGATCGCGCGCGCCATGGTGCAGGATTCGCCGATCCTCATTCTCGACGAGG
CGACGAGCTCGGTCGATACGCGCACCGAGGAGCTCATCCAGACGGCGATGGACAAGCTCACCGAAGGGCGCACGTCGTTC
GTCATCGCACACCGGCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGCGCGACGGCGACATCGTCGAGCGTGG
CACACACGAGGAACTGCTCGCGAAGCACGGTTTCTACGCCGACATCTACAACGCGCAGTTCACACTCGCGCAGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(389-536)

ABC transporter transmembrane region (ABC_membrane)

(35-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.499

96.399

0.525