Detailed information NTG0610470

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: LDO71_RS09535
• Genome accession: NZ_CP084297
• Coordinates: 2049362..2050063 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594575.1
• Uniprot ID: A0AAQ1ARG4
• Organism: Acinetobacter baumannii strain LHC22-2
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2044362..2055063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO71_RS09505 (LDO71_09505)	-	2044669..2045112 (-)	444	WP_032030219.1	SRPBCC family protein	-
LDO71_RS09510 (LDO71_09510)	tadA	2045182..2045685 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
LDO71_RS09515 (LDO71_09515)	-	2045692..2046816 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
LDO71_RS09520 (LDO71_09520)	ung	2046813..2047526 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
LDO71_RS09525 (LDO71_09525)	-	2047577..2048173 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
LDO71_RS09530 (LDO71_09530)	gspK	2048403..2049362 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
LDO71_RS09535 (LDO71_09535)	xcpW	2049362..2050063 (-)	702	WP_000594575.1	type II secretion system minor pseudopilin GspJ	Machinery gene
LDO71_RS09540 (LDO71_09540)	xcpV	2050063..2050443 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
LDO71_RS09545 (LDO71_09545)	-	2050433..2050987 (-)	555	WP_000841373.1	type II secretion system protein	-
LDO71_RS09550 (LDO71_09550)	-	2050997..2051605 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
LDO71_RS09555 (LDO71_09555)	-	2051643..2052416 (-)	774	WP_000497302.1	TatD family hydrolase	-
LDO71_RS09560 (LDO71_09560)	-	2052434..2052775 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
LDO71_RS09565 (LDO71_09565)	-	2052787..2053767 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
LDO71_RS09570 (LDO71_09570)	kdsB	2053779..2054540 (-)	762	WP_000680696.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26641.64 Da
• Isoelectric Point: 9.5501

>NTDB_id=610470 LDO71_RS09535 WP_000594575.1 2049362..2050063(-) (xcpW) [Acinetobacter baumannii strain LHC22-2]
MIKNKYIHIRSFAARLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=610470 LDO71_RS09535 WP_000594575.1 2049362..2050063(-) (xcpW) [Acinetobacter baumannii strain LHC22-2]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCAATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987