Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   NMT99_RS06170 Genome accession   NZ_CP101290
Coordinates   1198414..1199331 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain LjM2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1193414..1204331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS06155 trpS 1193993..1194985 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  NMT99_RS06160 oppA 1195730..1197367 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  NMT99_RS06165 oppB 1197475..1198410 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  NMT99_RS06170 amiD 1198414..1199331 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  NMT99_RS06175 oppD 1199336..1200412 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  NMT99_RS06180 oppF 1200414..1201331 (+) 918 WP_069703689.1 oligopeptide ABC transporter ATP-binding protein OppF -
  NMT99_RS06185 yjbB 1201438..1202655 (+) 1218 WP_080477793.1 MFS transporter -
  NMT99_RS06190 yjbC 1202819..1203397 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  NMT99_RS06195 spx 1203578..1203973 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=609975 NMT99_RS06170 WP_003232954.1 1198414..1199331(+) (amiD) [Bacillus subtilis strain LjM2]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=609975 NMT99_RS06170 WP_003232954.1 1198414..1199331(+) (amiD) [Bacillus subtilis strain LjM2]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTTTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGCACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGCATCGCTGACATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGGCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAACATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAAGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTGCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCCATTTTGGTCACGATGACATTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364