Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   I6G24_RS11960 Genome accession   NZ_CP084189
Coordinates   2284830..2285768 (+) Length   312 a.a.
NCBI ID   WP_023164597.1    Uniprot ID   A0AAQ0R465
Organism   Lactococcus lactis strain FDAARGOS_867     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2279830..2290768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G24_RS11935 (I6G24_11940) - 2280164..2280790 (+) 627 WP_004254567.1 ABC transporter ATP-binding protein -
  I6G24_RS11940 (I6G24_11945) - 2281127..2281900 (+) 774 WP_023164598.1 hypothetical protein -
  I6G24_RS11945 (I6G24_11950) - 2281916..2282374 (+) 459 WP_010906266.1 hypothetical protein -
  I6G24_RS11950 (I6G24_11955) typA 2282562..2284394 (+) 1833 WP_025016832.1 translational GTPase TypA -
  I6G24_RS11955 (I6G24_11960) - 2284491..2284742 (+) 252 WP_143460028.1 DUF3165 family protein -
  I6G24_RS11960 (I6G24_11965) comYH 2284830..2285768 (+) 939 WP_023164597.1 class I SAM-dependent methyltransferase Machinery gene
  I6G24_RS11965 (I6G24_11970) - 2285963..2287150 (+) 1188 WP_023164596.1 acetate kinase -
  I6G24_RS11970 (I6G24_11975) - 2287307..2288494 (+) 1188 WP_004254599.1 acetate kinase -
  I6G24_RS11975 (I6G24_11980) - 2288628..2289080 (+) 453 WP_010906263.1 hypothetical protein -
  I6G24_RS11980 (I6G24_11985) pyrH 2289165..2289881 (+) 717 WP_004254608.1 UMP kinase -
  I6G24_RS11985 (I6G24_11990) frr 2290093..2290650 (+) 558 WP_004254618.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34740.90 Da        Isoelectric Point: 4.4060

>NTDB_id=609969 I6G24_RS11960 WP_023164597.1 2284830..2285768(+) (comYH) [Lactococcus lactis strain FDAARGOS_867]
MDMEKVAQGFELVVANIMLLSEKLGTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEVMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAIITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=609969 I6G24_RS11960 WP_023164597.1 2284830..2285768(+) (comYH) [Lactococcus lactis strain FDAARGOS_867]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGGTACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCGGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAGTTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTATCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487