Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RBAU_RS08070 Genome accession   NC_022075
Coordinates   1644824..1645603 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis UCMB5033     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1639824..1650603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAU_RS08050 (RBAU_1572) trmFO 1640511..1641818 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RBAU_RS08055 (RBAU_1573) xerC 1641888..1642805 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  RBAU_RS08060 (RBAU_1574) hslV 1642821..1643366 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  RBAU_RS08065 (RBAU_1575) hslU 1643383..1644786 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  RBAU_RS08070 (RBAU_1576) codY 1644824..1645603 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RBAU_RS08075 (RBAU_1577) flgB 1645957..1646346 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  RBAU_RS08080 (RBAU_1578) flgC 1646346..1646798 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  RBAU_RS08085 (RBAU_1579) fliE 1646809..1647129 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  RBAU_RS08090 (RBAU_1580) fliF 1647172..1648782 (+) 1611 WP_007409778.1 flagellar basal-body MS-ring/collar protein FliF -
  RBAU_RS08095 (RBAU_1581) fliG 1648795..1649811 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  RBAU_RS08100 (RBAU_1582) fliH 1649804..1650559 (+) 756 WP_007409779.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=60980 RBAU_RS08070 WP_003154263.1 1644824..1645603(+) (codY) [Bacillus velezensis UCMB5033]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=60980 RBAU_RS08070 WP_003154263.1 1644824..1645603(+) (codY) [Bacillus velezensis UCMB5033]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTAGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment