Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LCP48_RS16115 Genome accession   NZ_CP084108
Coordinates   3269148..3271580 (-) Length   810 a.a.
NCBI ID   WP_009373770.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain anQ-h6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3264148..3276580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCP48_RS16105 corA 3266158..3267123 (-) 966 WP_004226828.1 magnesium/cobalt transporter CorA -
  LCP48_RS16110 hpaB 3267591..3269024 (-) 1434 WP_004226827.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  LCP48_RS16115 recD2 3269148..3271580 (-) 2433 WP_009373770.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LCP48_RS16120 hisA 3271770..3272537 (+) 768 WP_004226824.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  LCP48_RS16125 - 3272534..3272821 (+) 288 WP_004226823.1 hypothetical protein -
  LCP48_RS16130 - 3273778..3274527 (+) 750 WP_009373769.1 GTP pyrophosphokinase family protein -
  LCP48_RS16135 - 3274617..3276062 (-) 1446 WP_225340382.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90700.05 Da        Isoelectric Point: 4.8359

>NTDB_id=609625 LCP48_RS16115 WP_009373770.1 3269148..3271580(-) (recD2) [Lysinibacillus capsici strain anQ-h6]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGVGKKTAETIVEKLGANALRVILEDPNALDAVPRLSAEKKEVIHRTIEQNLGL
ERIMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISQACIGLREEGKICGEETRLYLPSLYFSEVGIASKILSLIERNNKA
EHFSKDEIRKAIGETEELLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPKELTAKTSDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDSLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMEIEEELVEVEAVSVENEGMQEPVSIEQKLTVETAPYIHPMIGMN
DVSPYDFLDD

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=609625 LCP48_RS16115 WP_009373770.1 3269148..3271580(-) (recD2) [Lysinibacillus capsici strain anQ-h6]
ATGACAGATCATTTAGATTTATTTGAACTCAATAAATTTTTTATACTCGGACGTCCGATCGTCTCTATCTTTCATAATGC
GCAAAATATGTATTCGATTGTACGTGTGAAAATTCAAGAGACGAATTTGCAATATGAAGATAAAGAAATTATTGTTGTTG
GTTATTTTCCCCCACTACAAATGGACGAACAATATCGATTTACTGGTATTTTAAAACAACATCCTAAATACGGTGCTCAA
TTTCAAATTGAGACATTTACGAAAGAAGTGCCTGCAACTGAGCAAGGAATTATTCATTATTTATCTAGTGACCTCTTCGT
AGGGGTCGGGAAAAAAACAGCTGAAACGATTGTTGAAAAACTAGGTGCGAATGCACTCCGTGTTATTTTAGAAGATCCTA
ATGCCCTCGATGCTGTTCCGCGCCTATCTGCTGAAAAAAAAGAAGTCATTCACCGCACCATTGAGCAAAACTTAGGTTTA
GAGCGGATCATGATTCAATTGAATGAGTGGGGATTTGGTCCACAGCTTGGCATGAAAATTTATCAAACCTATCGAACAGA
AGCCATTGAATTACTGACAGAAAATCCATACCGCTTAATTGAAGATGTGGAAGGAGTGGGTTTCTTTCGAGCTGATGAGC
TAGGTGCAAAATTAGGTATAACTGGTAAACATCCTGATCGTGTCAAAGCAGCGATTTTACATATTTTAAATACAGCAGCT
TTATCAGATGGACATGTCTATCTAGATGCAGAACATGTTTTACCGCTCGTTAAGGAAATGCTTGAACAAAGCCAACGACA
GGAGATACCATTCGAAGATATTTCTCAAGCCTGCATCGGACTCCGTGAAGAAGGCAAAATTTGTGGGGAAGAGACAAGGT
TATATTTACCGTCACTGTATTTTTCAGAGGTAGGGATTGCATCGAAAATCTTATCGCTTATCGAACGGAATAATAAGGCT
GAACATTTTAGTAAAGATGAAATTCGAAAAGCCATTGGAGAAACAGAGGAGCTACTCAATGTTACCTATGCAGAAACACA
AGCGAATGCCATTGAGCAGGCTTTAAATTCAGCCGTTATGATATTAACGGGTGGTCCTGGTACGGGGAAAACCACTGTTG
TACGGGGAGTCGTAGAAGTGTATGCAAAGCTTCATGGCCTATCCTTAAATCCAAAAGAGTATGCTCAAAAAGAGGAGCCT
TTTCCGATTATTCTTTGTGCTCCGACTGGACGTGCTGCTAAACGATTAGCCGAATCAACAGAGCTGCCTGCGATGACCAT
TCATCGACTGCTCGGTTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGTGAAGTGACAGGTAAGCTGATTATCGTGG
ATGAAATGTCCATGGTTGATACATGGCTTGCCCATCAATTATTAAAAGCTTTACATGAAGATGTTCAAGTTGTCTTTGTA
GGAGATCAGGATCAGCTTCCACCAGTAGGTCCAGGACAGGTGTTAAAAGATTTATTAGCATCCAAGCAGCTACCAACCGT
CGAGCTAACAGATGTTTACCGACAAGCAGAAGGCTCAACGATTATTGAACTTGCCCATCAAATAAAAAAAGGAACGATTC
CAAAAGAGTTAACAGCTAAAACCTCTGATCGTTCGTTTATTAAGGCTTCAGCCGATCAAGTTGCCAACGTTGTAACACAG
GTTGTCAAAAGTGCTGTCGCAAAAGGTCAGGAAATCCGTAATATCCAAGTGTTGGCACCCATGTATAAAGGACCAGCTGG
GATAGATAGTTTAAATAAAATGATTCAAGAGCTTATTAATCCAAACGATACTGGAACACGAAAAGAGCTAGTCTTTGGGG
ATGTAACCTATCGAATAAAGGATAAAGTTCTTCAGCTTGTCAATCAACCAGAAAGCAATGTCTTTAATGGAGATATGGGT
GAGGTCATTAGTATTATTAAGGCGAAAGAGACGGTCGAAAAACAAGATTTATTGATCGTATCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGCGATCTCAATCAATTGACACTAGCTTATTGTTGCTCCATCCATAAATCACAGGGCTCTGAGTTTC
AAACGGTCATTATGCCAGTGGTTAGAGGGTATTCCAAAATGTTACGGCGTAATCTTTTATACACAGGTATTACACGTGCT
AAAAACTTTTTGATTTTATGTGGTGAACCAGATGTACTTGCAGATGGTTTACAACGTACAGATGACCTACAGCGTTTCAC
CTCTTTACGTGCAAGACTTAACCCAATGGAAATTGAGGAAGAACTTGTGGAAGTCGAGGCAGTGTCAGTTGAAAATGAAG
GGATGCAAGAGCCTGTTTCCATTGAACAAAAGCTAACAGTAGAAACAGCCCCTTATATTCATCCAATGATTGGTATGAAT
GATGTCTCTCCTTATGATTTTTTGGATGACTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

AAA domain (AAA_30)

(343-550)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.334

100

0.526