Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H8R35_RS06130 Genome accession   NZ_CP084085
Coordinates   1174462..1174977 (+) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain MS2167     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1169462..1179977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R35_RS06105 (H8R35_001020) - 1169922..1170260 (+) 339 WP_002852397.1 hypothetical protein -
  H8R35_RS06110 (H8R35_001021) cdsA 1170269..1170994 (+) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  H8R35_RS06115 (H8R35_001022) dxr 1170991..1172061 (+) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H8R35_RS06120 (H8R35_001023) - 1172063..1173457 (+) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H8R35_RS06125 (H8R35_001024) tsaD 1173454..1174461 (+) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H8R35_RS06130 (H8R35_001025) ctsG 1174462..1174977 (+) 516 WP_002799196.1 type II secretion system protein Machinery gene
  H8R35_RS06135 - 1174977..1176220 (+) 1244 Protein_1185 DUF2920 family protein -
  H8R35_RS06140 (H8R35_001026) - 1176230..1178053 (+) 1824 WP_020836874.1 motility associated factor glycosyltransferase family protein -
  H8R35_RS06145 (H8R35_001027) - 1178050..1179867 (+) 1818 WP_058001899.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=609482 H8R35_RS06130 WP_002799196.1 1174462..1174977(+) (ctsG) [Campylobacter jejuni strain MS2167]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=609482 H8R35_RS06130 WP_002799196.1 1174462..1174977(+) (ctsG) [Campylobacter jejuni strain MS2167]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942