Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   H8R36_RS06210 Genome accession   NZ_CP084084
Coordinates   1179651..1180382 (+) Length   243 a.a.
NCBI ID   WP_002855729.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2074     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1174651..1185382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R36_RS06180 (H8R36_001031) rpsF 1174793..1175170 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  H8R36_RS06185 (H8R36_001032) ssb 1175179..1175730 (+) 552 WP_002856575.1 single-stranded DNA-binding protein -
  H8R36_RS06190 (H8R36_001033) rpsR 1175741..1176001 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  H8R36_RS06195 (H8R36_001034) lon 1176062..1178437 (-) 2376 WP_002856101.1 endopeptidase La -
  H8R36_RS06200 (H8R36_001035) - 1178454..1179101 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  H8R36_RS06205 (H8R36_001036) fliW 1179262..1179651 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  H8R36_RS06210 (H8R36_001037) proC 1179651..1180382 (+) 732 WP_002855729.1 pyrroline-5-carboxylate reductase Machinery gene
  H8R36_RS06215 (H8R36_001038) ctsT 1180379..1180681 (+) 303 WP_002855822.1 transformation system protein Machinery gene
  H8R36_RS06220 (H8R36_001039) - 1180678..1181340 (+) 663 WP_002866103.1 hypothetical protein -
  H8R36_RS06225 (H8R36_001040) - 1181337..1181789 (+) 453 WP_002869049.1 hypothetical protein -
  H8R36_RS06230 (H8R36_001041) hemD 1181786..1182415 (-) 630 WP_002856298.1 uroporphyrinogen-III synthase -
  H8R36_RS06235 (H8R36_001042) thiE 1182393..1183025 (-) 633 WP_002911210.1 thiamine phosphate synthase -
  H8R36_RS06240 (H8R36_001043) thiD 1183015..1183827 (-) 813 WP_002856188.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  H8R36_RS06245 (H8R36_001044) - 1183824..1184510 (-) 687 WP_002856040.1 endonuclease III domain-containing protein -
  H8R36_RS06250 (H8R36_001045) - 1184507..1185268 (-) 762 WP_002856328.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26592.01 Da        Isoelectric Point: 8.5934

>NTDB_id=609449 H8R36_RS06210 WP_002855729.1 1179651..1180382(+) (proC) [Campylobacter jejuni strain MS2074]
MLYILANGAMATALAYGLKDDYEICIVGRSIEKLQALTKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIMPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=609449 H8R36_RS06210 WP_002855729.1 1179651..1180382(+) (proC) [Campylobacter jejuni strain MS2074]
ATGCTCTATATACTTGCAAATGGAGCTATGGCAACAGCCTTAGCCTATGGATTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCACCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCCTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATGCCCAATAC
AGCAGCTAAATATAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCGGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.177

100

0.992