Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H8R34_RS04925 Genome accession   NZ_CP084082
Coordinates   940925..941440 (-) Length   171 a.a.
NCBI ID   WP_040966638.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2058     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 935925..946440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R34_RS04910 (H8R34_000853) - 936038..937855 (-) 1818 WP_096777907.1 motility associated factor glycosyltransferase family protein -
  H8R34_RS04915 (H8R34_000854) - 937852..939675 (-) 1824 WP_255005304.1 motility associated factor glycosyltransferase family protein -
  H8R34_RS04920 - 939685..940925 (-) 1241 Protein_957 DUF2920 family protein -
  H8R34_RS04925 (H8R34_000857) ctsG 940925..941440 (-) 516 WP_040966638.1 type II secretion system protein Machinery gene
  H8R34_RS04930 (H8R34_000858) tsaD 941441..942448 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H8R34_RS04935 (H8R34_000859) - 942445..943839 (-) 1395 WP_002865638.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H8R34_RS04940 (H8R34_000860) dxr 943841..944911 (-) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H8R34_RS04945 (H8R34_000861) cdsA 944908..945633 (-) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  H8R34_RS04950 (H8R34_000862) - 945642..945980 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18706.61 Da        Isoelectric Point: 6.4682

>NTDB_id=609424 H8R34_RS04925 WP_040966638.1 940925..941440(-) (ctsG) [Campylobacter jejuni strain MS2058]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNVIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=609424 H8R34_RS04925 WP_040966638.1 940925..941440(-) (ctsG) [Campylobacter jejuni strain MS2058]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGTTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936