Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H8R33_RS06510 Genome accession   NZ_CP084080
Coordinates   1232198..1232713 (+) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain MS2005     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1227198..1237713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R33_RS06485 (H8R33_001076) - 1227658..1227996 (+) 339 WP_002852397.1 hypothetical protein -
  H8R33_RS06490 (H8R33_001077) cdsA 1228005..1228730 (+) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  H8R33_RS06495 (H8R33_001078) dxr 1228727..1229797 (+) 1071 WP_042635905.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H8R33_RS06500 (H8R33_001079) - 1229799..1231193 (+) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H8R33_RS06505 (H8R33_001080) tsaD 1231190..1232197 (+) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H8R33_RS06510 (H8R33_001081) ctsG 1232198..1232713 (+) 516 WP_002799196.1 type II secretion system protein Machinery gene
  H8R33_RS06515 (H8R33_001082) - 1232713..1233954 (+) 1242 WP_042635904.1 DUF2920 family protein -
  H8R33_RS06520 (H8R33_001083) - 1233966..1235786 (+) 1821 WP_042635903.1 motility associated factor glycosyltransferase family protein -
  H8R33_RS06525 (H8R33_001084) - 1235786..1237603 (+) 1818 WP_042635902.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=609404 H8R33_RS06510 WP_002799196.1 1232198..1232713(+) (ctsG) [Campylobacter jejuni strain MS2005]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=609404 H8R33_RS06510 WP_002799196.1 1232198..1232713(+) (ctsG) [Campylobacter jejuni strain MS2005]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942