Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LC508_RS27305 Genome accession   NZ_CP084061
Coordinates   6036444..6038288 (+) Length   614 a.a.
NCBI ID   WP_052099620.1    Uniprot ID   -
Organism   Blautia parvula strain NBRC 113351     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6031444..6043288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC508_RS27290 (LC508_27290) - 6032206..6033594 (+) 1389 WP_103733035.1 MATE family efflux transporter -
  LC508_RS27295 (LC508_27295) - 6033833..6034267 (+) 435 WP_033142651.1 MarR family winged helix-turn-helix transcriptional regulator -
  LC508_RS27300 (LC508_27300) - 6034286..6036451 (+) 2166 WP_033142650.1 ABC transporter ATP-binding protein -
  LC508_RS27305 (LC508_27305) rcrQ 6036444..6038288 (+) 1845 WP_052099620.1 ABC transporter ATP-binding protein Regulator
  LC508_RS27310 (LC508_27310) aroF 6038747..6039757 (+) 1011 WP_033142649.1 3-deoxy-7-phosphoheptulonate synthase -
  LC508_RS27315 (LC508_27315) - 6039762..6041969 (+) 2208 WP_103732167.1 DNA topoisomerase III -
  LC508_RS27320 (LC508_27320) - 6042117..6042470 (-) 354 WP_033142647.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68641.48 Da        Isoelectric Point: 7.0074

>NTDB_id=609295 LC508_RS27305 WP_052099620.1 6036444..6038288(+) (rcrQ) [Blautia parvula strain NBRC 113351]
MSNTARRPRGPMGGHGKGMPGEKAKDFKGAMKRLVKYMERYKFRLMLMILFAVGGTVFNIVGPKILGKATTELFNGLVSK
INGGSGINFDKIVQILLGCLCLYLVSALLSFIQGFIMTGISNDVTYNLRKDISEKINRIPMKYFESRTHGEILSRITNDV
DTLQMGINQSVTQLITSCTTLVGVLVMMLSINVWMTLAALLILPVSMAIISKVMKHSQKYFQAQQKYLGEVNGQVEEIYS
GHNVVKAFNKEESVINEFEKTNEKLYSSAWRSQFFSGMMMPIMQFVGNLGYVMVALLGGFMVIKNRIEVGDVQAFFQYIR
NFTQPIQQIAQVTNMLQSSAAASERVFEFLDVPEEEQIVENPADVSHIDGNVEICHTSFGYDPNKIIIHDFSASVKAGQK
VAIVGPTGAGKTTMIKLLMRFYDVNSGEILIDGHNIKDFNRSELRELFGMVLQDTWLFHGTIMENIRYGRLDATDEEVIA
AAKAAHAHHFIMSQPGGYQMVLNEETNNISQGQKQLLTIARAILADNRILILDEATSSVDTRTEERIQKAMDNLMKGRTS
FVIAHRLSTIRDADLILVMKDGDIIEQGTHESLLAADGFYANLYNSQFERAEAM

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=609295 LC508_RS27305 WP_052099620.1 6036444..6038288(+) (rcrQ) [Blautia parvula strain NBRC 113351]
ATGAGTAATACTGCGAGAAGACCGAGAGGGCCGATGGGTGGTCACGGAAAAGGAATGCCGGGCGAGAAGGCAAAAGATTT
TAAAGGCGCCATGAAACGCCTGGTGAAATACATGGAGCGGTATAAGTTCCGCCTGATGCTGATGATCCTGTTTGCTGTGG
GCGGTACGGTATTTAATATTGTGGGGCCGAAGATTTTAGGAAAGGCTACCACGGAACTGTTTAACGGACTGGTGTCCAAG
ATAAACGGCGGCAGCGGAATTAATTTCGATAAAATTGTCCAGATCCTTTTGGGATGTCTCTGCCTGTACCTGGTAAGTGC
CCTGTTGTCCTTTATCCAGGGATTTATTATGACGGGAATCTCAAATGATGTAACTTATAACCTGAGAAAAGATATTTCCG
AGAAGATCAACAGAATTCCCATGAAATATTTTGAGAGCAGGACCCACGGAGAGATCCTTTCCAGGATCACCAACGATGTG
GATACCCTGCAGATGGGTATCAACCAGAGCGTGACCCAGCTCATCACGTCCTGCACCACCTTGGTCGGTGTGCTGGTGAT
GATGCTGAGCATCAATGTGTGGATGACGCTGGCAGCCCTGCTGATCCTGCCTGTTTCCATGGCGATCATCAGCAAGGTCA
TGAAACATTCACAGAAATATTTCCAGGCGCAGCAGAAGTACCTGGGTGAAGTAAACGGGCAGGTGGAGGAGATCTACAGC
GGACATAACGTTGTGAAAGCCTTCAACAAAGAGGAATCCGTGATCAATGAATTTGAGAAGACCAATGAGAAGCTGTACAG
CTCTGCATGGCGCTCCCAGTTTTTCTCCGGCATGATGATGCCTATCATGCAGTTTGTGGGAAATCTGGGATATGTGATGG
TTGCCCTTTTGGGCGGATTCATGGTTATTAAGAACAGGATTGAAGTGGGCGATGTGCAGGCATTTTTCCAGTACATCAGA
AACTTTACCCAGCCCATCCAGCAGATTGCCCAGGTGACGAATATGCTGCAGTCTTCAGCCGCCGCATCCGAGAGGGTCTT
TGAATTTCTGGATGTCCCGGAGGAAGAGCAGATTGTGGAAAACCCTGCAGATGTAAGCCATATTGACGGCAATGTGGAAA
TCTGCCACACTTCCTTTGGATATGATCCGAACAAAATCATTATCCATGATTTCTCCGCATCTGTAAAAGCGGGGCAGAAG
GTGGCAATCGTCGGCCCGACAGGTGCCGGCAAGACGACCATGATCAAACTGCTGATGCGGTTCTACGACGTCAATTCCGG
TGAGATCCTGATCGACGGCCATAATATCAAAGACTTTAACAGAAGTGAACTGCGGGAACTGTTCGGCATGGTGCTGCAGG
ATACCTGGCTGTTCCACGGAACGATCATGGAAAATATCCGTTACGGCAGGCTGGACGCCACGGATGAGGAGGTTATCGCT
GCGGCGAAAGCGGCGCATGCCCACCACTTCATCATGTCACAGCCCGGCGGCTACCAGATGGTGCTGAATGAGGAGACAAA
CAACATTTCCCAGGGACAGAAGCAGCTTCTGACCATAGCAAGGGCAATTCTGGCGGACAACCGGATACTGATCCTGGATG
AGGCTACATCCTCTGTGGATACCAGGACAGAGGAGCGTATACAGAAGGCTATGGATAACCTGATGAAGGGCAGAACCAGC
TTTGTGATCGCGCACCGGCTTTCTACCATACGTGACGCGGATTTGATCCTTGTGATGAAAGACGGAGATATCATTGAGCA
GGGAACCCATGAATCGCTGCTGGCAGCAGACGGATTTTATGCGAATCTGTACAACAGCCAGTTTGAGAGAGCTGAGGCAA
TGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(45-325)

ABC transporter (ABC_tran)

(389-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.775

94.625

0.48