Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   EL269_RS10695 Genome accession   NZ_AP018935
Coordinates   2049712..2050980 (+) Length   422 a.a.
NCBI ID   WP_000774760.1    Uniprot ID   Q8DX76
Organism   Streptococcus agalactiae strain HU-GS5823     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2044712..2055980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL269_RS10655 (SAGS_2034) prmA 2045108..2046061 (-) 954 WP_001099294.1 50S ribosomal protein L11 methyltransferase -
  EL269_RS10660 (SAGS_2035) - 2046058..2046522 (-) 465 WP_306341185.1 MepB family protein -
  EL269_RS10665 (SAGS_2036) - 2046640..2047356 (+) 717 WP_000859573.1 MerR family transcriptional regulator -
  EL269_RS10670 (SAGS_2037) - 2047395..2047865 (-) 471 WP_000631751.1 GNAT family N-acetyltransferase -
  EL269_RS10675 (SAGS_2038) - 2047837..2048295 (-) 459 WP_000350744.1 NUDIX hydrolase -
  EL269_RS11965 - 2048282..2048425 (-) 144 Protein_1966 RNA-binding protein -
  EL269_RS10685 (SAGS_2039) - 2048431..2048901 (-) 471 WP_001051348.1 DUF3013 family protein -
  EL269_RS10690 (SAGS_2040) - 2049228..2049719 (+) 492 WP_000586891.1 GNAT family N-acetyltransferase -
  EL269_RS10695 (SAGS_2041) rarA 2049712..2050980 (+) 1269 WP_000774760.1 replication-associated recombination protein A Machinery gene
  EL269_RS10710 (SAGS_2043) - 2051424..2052545 (-) 1122 WP_000257255.1 site-specific integrase -
  EL269_RS10715 (SAGS_2044) - 2052595..2052921 (-) 327 WP_001188031.1 DUF771 domain-containing protein -
  EL269_RS10720 (SAGS_2045) - 2053114..2053746 (-) 633 WP_000578743.1 hypothetical protein -
  EL269_RS10725 (SAGS_2046) - 2053827..2054618 (-) 792 WP_000048867.1 LPXTG cell wall anchor domain-containing protein -
  EL269_RS10730 (SAGS_2047) - 2054635..2055183 (-) 549 WP_000829082.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46572.99 Da        Isoelectric Point: 6.3530

>NTDB_id=60927 EL269_RS10695 WP_000774760.1 2049712..2050980(+) (rarA) [Streptococcus agalactiae strain HU-GS5823]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQCSYITMDKNGDGHY
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=60927 EL269_RS10695 WP_000774760.1 2049712..2050980(+) (rarA) [Streptococcus agalactiae strain HU-GS5823]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTCTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTTATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGTGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATATCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCCGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCTTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTACTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DX76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588

Multiple sequence alignment