Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LCF45_RS21705 Genome accession   NZ_CP084035
Coordinates   4230924..4233260 (-) Length   778 a.a.
NCBI ID   WP_002184924.1    Uniprot ID   A0A7Z8RXK7
Organism   Bacillus sp. 41-22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4225924..4238260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF45_RS21680 (LCF45_21660) - 4228585..4228929 (+) 345 WP_002129215.1 PH domain-containing protein -
  LCF45_RS21685 (LCF45_21665) - 4228968..4230035 (-) 1068 WP_002129216.1 AI-2E family transporter -
  LCF45_RS21690 (LCF45_21670) - 4230212..4230424 (+) 213 WP_002015285.1 hypothetical protein -
  LCF45_RS21695 (LCF45_21675) - 4230461..4230589 (-) 129 WP_002015286.1 YrzQ family protein -
  LCF45_RS21700 (LCF45_21680) - 4230608..4230796 (-) 189 WP_002015288.1 hypothetical protein -
  LCF45_RS21705 (LCF45_21685) recD2 4230924..4233260 (-) 2337 WP_002184924.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LCF45_RS21710 (LCF45_21690) - 4233368..4234027 (-) 660 WP_002088750.1 tetratricopeptide repeat protein -
  LCF45_RS21715 (LCF45_21695) mnmA 4234138..4235253 (-) 1116 WP_002088752.1 tRNA 2-thiouridine(34) synthase MnmA -
  LCF45_RS21720 (LCF45_21700) - 4235270..4236415 (-) 1146 WP_002129219.1 cysteine desulfurase family protein -
  LCF45_RS21725 (LCF45_21705) cymR 4236451..4236867 (-) 417 WP_000704117.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87164.82 Da        Isoelectric Point: 5.2043

>NTDB_id=609183 LCF45_RS21705 WP_002184924.1 4230924..4233260(-) (recD2) [Bacillus sp. 41-22]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALSGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGGVTEEDIVGCVEMMQGEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNLNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=609183 LCF45_RS21705 WP_002184924.1 4230924..4233260(-) (recD2) [Bacillus sp. 41-22]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGA
AAACAATATTTAGTTGAAACGTTTAAAAAAGAATTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTGGACCATCTTGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAGTGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTC
GAGAAAGTGATGAGTTTTTTAAATGGTTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCACGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCGG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAGGTGAAGGGAAAGTCATCATAGAAGAAGAGCGTGTGT
ATTTAGCTTCGTTATTTTACTCTGAAAAAGGCGTTGTAAAGTCCATTCGCAGGCTTATGAATCAAGAGGAAACCCCTGCA
TTTCCTGAAGCAGAAGTGTTAAAGACATTAGGTGAAATTGAAGAACAGCTAAAGGTACAGTATGCACCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTATTAACAGGTGGACCAGGAACGGGGAAAACTACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCGCTTCACGGGCTATCACTAAATCTAAATGAATATAGTGATGACAATCCATTTCCAATA
CTATTAACGGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCGACGGGGCTTCCGGCGTGCACGATTCATCGCCT
GCTTGGATGGACGCCAGAAGGGTCTTTCCAGCGCAATGAAACAGACCCTGTTCAAGGGAAGCTCCTTATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTGGCAAATCAATTGTTTAAATCCTTGCCGACGAACATCCAAGTAATCGTTGTAGGTGAT
GAAGACCAATTACCATCGGTAGGACCTGGACAAGTGTTGAAAGATTTATTAAATGCAGGTGCCATTCCAACGGTAAAACT
CACAGAAATTTATCGTCAGGCAGAAGGTTCGTCTGTTATTCAGCTTGCCCATGCGATAAAAGACGGGACGCTCCCGCCAG
ATTTAGCACAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGTGCTCAAATTGTTGAGGTTGTTAAAAAGGTTTGT
GAAAATGCTAAGACAAAAGGCTTTAGTGCAAGAGATGTACAAGTATTGGCACCAATGTATCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAGAGTAAAGAAATTGCCTACGGTGACGTTGTAT
ACCGCAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTGTTTAATGGTGATATTGGAGAAATTGTT
TCAGTATTTTATGCGAAAGAAAATGTCGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACATATAC
AAAGCCGGATTTAAATCAAATTACGCATGCCTATTGCTGCTCGATTCATAAATCGCAAGGTAGTGAATTCCCAATAGTTA
TTATGCCGATTGTAAAGAGCTACTACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGGAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCGTTTCAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGCCGATTGCAAGAATCACAAGGAGAAGTGCAGATGGTGACGGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z8RXK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577