Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LCF45_RS18850 Genome accession   NZ_CP084035
Coordinates   3710902..3711681 (-) Length   259 a.a.
NCBI ID   WP_002014541.1    Uniprot ID   -
Organism   Bacillus sp. 41-22     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3705902..3716681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF45_RS18825 (LCF45_18810) uppS 3706665..3707441 (-) 777 WP_033731196.1 isoprenyl transferase -
  LCF45_RS18830 (LCF45_18815) frr 3707527..3708084 (-) 558 WP_000531506.1 ribosome recycling factor -
  LCF45_RS18835 (LCF45_18820) pyrH 3708088..3708810 (-) 723 WP_002014544.1 UMP kinase -
  LCF45_RS18840 (LCF45_18825) tsf 3708877..3709764 (-) 888 WP_002088177.1 translation elongation factor Ts -
  LCF45_RS18845 (LCF45_18830) rpsB 3709847..3710548 (-) 702 WP_002185070.1 30S ribosomal protein S2 -
  LCF45_RS18850 (LCF45_18835) codY 3710902..3711681 (-) 780 WP_002014541.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LCF45_RS18855 (LCF45_18840) hslU 3711759..3713150 (-) 1392 WP_002014539.1 ATP-dependent protease ATPase subunit HslU -
  LCF45_RS18860 (LCF45_18845) hslV 3713173..3713715 (-) 543 WP_002014538.1 ATP-dependent protease proteolytic subunit HslV -
  LCF45_RS18865 (LCF45_18850) xerC 3713758..3714657 (-) 900 WP_078175468.1 tyrosine recombinase XerC -
  LCF45_RS18870 (LCF45_18855) trmFO 3714729..3716033 (-) 1305 WP_002066796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.99 Da        Isoelectric Point: 4.7251

>NTDB_id=609175 LCF45_RS18850 WP_002014541.1 3710902..3711681(-) (codY) [Bacillus sp. 41-22]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=609175 LCF45_RS18850 WP_002014541.1 3710902..3711681(-) (codY) [Bacillus sp. 41-22]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCGGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTGGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456