Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   M6G08_RS04555 Genome accession   NZ_CP101137
Coordinates   1017101..1019356 (-) Length   751 a.a.
NCBI ID   WP_272585895.1    Uniprot ID   -
Organism   Streptomyces sp. M92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1012101..1024356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G08_RS04540 (M6G08_04550) - 1012423..1012662 (+) 240 WP_272585892.1 heavy-metal-associated domain-containing protein -
  M6G08_RS04545 (M6G08_04555) - 1012697..1014970 (+) 2274 WP_272585893.1 heavy metal translocating P-type ATPase -
  M6G08_RS04550 (M6G08_04560) - 1015568..1016857 (-) 1290 WP_272585894.1 citrate synthase -
  M6G08_RS04555 (M6G08_04565) recD/recD2/recDB 1017101..1019356 (-) 2256 WP_272585895.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M6G08_RS04560 (M6G08_04570) - 1019423..1019995 (+) 573 WP_272585896.1 Uma2 family endonuclease -
  M6G08_RS04565 (M6G08_04575) - 1019992..1020321 (+) 330 WP_272591259.1 ATP-binding protein -
  M6G08_RS04570 (M6G08_04580) - 1020378..1021718 (+) 1341 WP_272585897.1 hypothetical protein -
  M6G08_RS04575 (M6G08_04585) - 1021767..1022384 (-) 618 WP_272585898.1 TOPRIM nucleotidyl transferase/hydrolase domain-containing protein -
  M6G08_RS04580 (M6G08_04590) - 1022511..1023314 (+) 804 WP_272585899.1 metalloregulator ArsR/SmtB family transcription factor -
  M6G08_RS04585 (M6G08_04595) - 1023328..1024272 (-) 945 WP_272585900.1 RNA polymerase sigma-70 factor -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81065.68 Da        Isoelectric Point: 6.4622

>NTDB_id=608984 M6G08_RS04555 WP_272585895.1 1017101..1019356(-) (recD/recD2/recDB) [Streptomyces sp. M92]
MTDQPPAAPGERRLATLEGVLERVTYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQFH
VENYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGIDTLTVIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKE
VMLFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQATDQ
GHCYLPEEKLIADAVKLLQVDTGLVIECLGELAAEPENPDDDPGVVREKVPGPEGGDPVTAVYLVPFHRAELALAGQLRR
LLRTEEDRMPAFQGVAWDKALGWLGQRTGADLAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLA
APTGRAAKRLAELTGAEASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQ
LPSVGAGEVLRDLLAPGSPVPAVRLTRVFRQAQQSGVVTNAHRINAGQHPLTDGMKDFFLFVEDDTEEAGRLTVDVAARR
IPAKFGLDPRRDVQVLAPMHRGPAGAGTLNGLLQQAVTPGRPDLAEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVG
VVTSLDPVDQRLTVLTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLAGP

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=608984 M6G08_RS04555 WP_272585895.1 1017101..1019356(-) (recD/recD2/recDB) [Streptomyces sp. M92]
ATGACCGACCAGCCCCCCGCGGCCCCCGGCGAGCGGCGGCTCGCCACCCTCGAAGGCGTCCTGGAGCGCGTCACGTACGC
CAACGAGGAGAACGGCTACACCGTCGCCCGTGTCGACACCGGCAGAGGCGCCGGCGACCTGCTGACCGTCGTCGGCGCGC
TGCTCGGCGCGCAGGTCGGGGAGTCGCTGCGGATGGAGGGGCGGTGGGGCTCGCACCCGCAGTACGGCAAGCAGTTCCAC
GTCGAGAACTACACGACCGTCCTGCCCGCCACCGTCCAGGGCATCCGGCGCTACCTCGGCTCCGGCCTCGTCAAGGGCAT
CGGGCCGGTCTTCGCCGACCGCATCACGCAGCATTTCGGCATCGACACCCTCACCGTCATCGAGGAGGAGCCCAAGCGGC
TGATCGAGGTGCCCGGCCTCGGTCCCAAGCGGACGAAGAAGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAGGAG
GTCATGCTCTTCCTCCAGACCGTCGAGGTGTCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGGCGACGCGTCGAT
CTCCGTCGTGAAGAACCAGCCCTACCGCCTGGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCC
AGTCCGTCGGCATCCCGCACGACAGCCCGGAACGGGTGAAGGCGGGCTTGCAGTACGCCCTGTCCCAGGCCACCGACCAG
GGGCACTGCTATCTCCCCGAGGAGAAGTTGATCGCCGACGCGGTGAAGTTGCTCCAGGTGGACACCGGGCTCGTCATCGA
GTGTCTGGGAGAGCTGGCCGCCGAGCCGGAGAACCCGGACGACGACCCCGGCGTCGTGCGCGAGAAGGTGCCCGGCCCGG
AGGGCGGCGACCCGGTCACCGCCGTCTACCTCGTCCCCTTCCACCGCGCCGAGCTGGCCCTCGCCGGACAGCTCCGCCGC
CTCCTGCGTACCGAGGAGGACCGGATGCCCGCCTTCCAGGGCGTGGCCTGGGACAAGGCGCTCGGGTGGCTCGGGCAGCG
CACGGGCGCCGATCTCGCGCCCGAGCAGGAGGCGGCCGTACGCCTCGCCCTCACCGAGAAGGTCGCCGTCCTCACCGGCG
GGCCCGGCTGCGGCAAGTCGTTCACCGTGCGGTCGGTCGTGGAGCTGGCGCGCGCGAAGAAGGCGAAGGTGGTGCTCGCC
GCGCCCACCGGGCGGGCGGCCAAGCGCCTCGCCGAGCTGACCGGCGCCGAGGCGTCCACGGTGCACCGGCTGCTGGAGCT
GAAGCCGGGCGGTGACGCCGCCTACGACCGGGACCGGCCCCTCGACGCCGACCTCGTCGTGGTGGACGAGGCGTCGATGC
TGGACCTGCTCCTCGCCAACAAGCTGGTCAAGGCGGTGCCCCCGGGTGCCCATCTGCTCTTCGTCGGGGACGTCGACCAG
CTGCCGAGTGTGGGGGCGGGGGAGGTGCTGCGGGATCTGCTCGCACCCGGCAGCCCCGTTCCCGCCGTCCGGCTCACCCG
GGTCTTCCGGCAGGCCCAGCAGTCGGGGGTGGTGACCAACGCGCACCGGATCAACGCCGGACAGCATCCGCTCACCGACG
GGATGAAGGACTTCTTCCTCTTCGTCGAGGACGACACCGAGGAGGCGGGGCGGCTCACCGTCGACGTAGCCGCGCGGCGC
ATTCCGGCGAAGTTCGGGCTCGACCCGCGGCGTGATGTGCAGGTGCTGGCGCCGATGCACCGGGGGCCCGCCGGCGCCGG
GACGCTGAACGGGCTGCTCCAGCAGGCCGTCACCCCCGGCCGCCCGGATCTCGCCGAGAAGAGGTTCGGCGGCCGTGTTT
TCCGGGTCGGCGACAAGGTCACCCAGATTCGCAACAATTACGAGAAGGGTGAGAACGGTGTCTTCAACGGCACCGTCGGC
GTGGTCACCTCGCTCGACCCGGTGGACCAGCGCCTCACCGTGCTGACGGACGAGGACGAGGAGGTTCCGTACGAATTCGA
CGAACTGGACGAACTGGCCCACGCCTACGCGGTGACCATCCACCGGTCCCAGGGCAGTGAGTATCCGGCGGTCGTGATTC
CCGTGACCACCGGTGCCTGGATGATGCTCCAGCGGAACCTGCTCTACACGGCGGTCACCCGGGCCAAGCGGCTGGTCGTC
CTCGTCGGTTCCCGCAAGGCGATCGGACAGGCGGTGCGCACGGTGTCGGCCGGCCGGCGCTGCACGGCGCTCGACTTCCG
GCTGGCGGGCCCCTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

Helix-hairpin-helix domain (HHH_5)

(104-153)

AAA domain (AAA_30)

(352-530)

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-244)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-654)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.492

100

0.365