Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LCQ72_RS01900 Genome accession   NZ_CP084014
Coordinates   384413..386236 (-) Length   607 a.a.
NCBI ID   WP_101884684.1    Uniprot ID   A0A2N5NV65
Organism   Mediterraneibacter gnavus strain NBRC 114413     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 379413..391236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCQ72_RS01870 (LCQ72_01870) - 380105..380845 (-) 741 WP_117636596.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LCQ72_RS01875 (LCQ72_01875) prmA 380862..381818 (-) 957 WP_004843002.1 50S ribosomal protein L11 methyltransferase -
  LCQ72_RS01880 (LCQ72_01880) - 381910..382353 (-) 444 WP_117636595.1 MOSC domain-containing protein -
  LCQ72_RS01885 (LCQ72_01885) moaA 382360..383340 (-) 981 WP_225084325.1 GTP 3',8-cyclase MoaA -
  LCQ72_RS01890 (LCQ72_01890) - 383313..383813 (-) 501 WP_004842999.1 MogA/MoaB family molybdenum cofactor biosynthesis protein -
  LCQ72_RS01895 (LCQ72_01895) moaC 383810..384313 (-) 504 WP_004842998.1 cyclic pyranopterin monophosphate synthase MoaC -
  LCQ72_RS01900 (LCQ72_01900) rcrQ 384413..386236 (-) 1824 WP_101884684.1 ABC transporter ATP-binding protein Regulator
  LCQ72_RS01905 (LCQ72_01905) - 386229..388463 (-) 2235 WP_004842995.1 ABC transporter ATP-binding protein -
  LCQ72_RS01910 (LCQ72_01910) - 388482..388970 (-) 489 WP_004842994.1 MarR family winged helix-turn-helix transcriptional regulator -
  LCQ72_RS01915 (LCQ72_01915) - 389178..390332 (-) 1155 WP_009245898.1 DUF4317 domain-containing protein -
  LCQ72_RS01920 (LCQ72_01920) rd 390635..390796 (+) 162 WP_004842991.1 rubredoxin -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 67687.19 Da        Isoelectric Point: 5.2811

>NTDB_id=608961 LCQ72_RS01900 WP_101884684.1 384413..386236(-) (rcrQ) [Mediterraneibacter gnavus strain NBRC 114413]
MPRHGHMGPQGADEKAKDLKGTLKKLLHYMSVFKVQMLLIVIFAVCGTTFTIIGPKILGKATTEIANGLMSKVSGGSGMD
FEKIGQILLLTLALYLVSTLCSFIQGYLMTGVSQKTTYRLRKEISEKINRMPMNYFDTKPVGEVLSRVTNDVDTLGQSLN
QSATQMIQSVTTLIGVLIMMLTISPLMTLVTLIILPISMLLIGFVMKHSQKYFRGQQEYLGNVNGQVEEVYSGHSIIKAF
NKEENVIDEFDATNDKLYDSAWKSQFFSGMMMPIMQFIGNLGYVVVAILGGFLTIKKTIEVGDIQSFIQYVRSFTQPIQQ
IAQVANMLQMTAAASERVFEFLEEEEEDQTVEHPVSVENLEGNVSFDHVHFGYNADRIIVNDFSAEVKEGQKIAIVGPTG
AGKTTMIKLLMRFYDVNSGAIKIDGHDVRDFNRSELREMFGMVLQDTWLFNGSIWDNIKYGKLDATDEEVIQAAKAAHVH
QFVKTLPGGYDMELNEEANNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMKGRTSFVIAHRLS
TIRDADMILVMKDGDIVEQGNHEELLAKGGFYADLYNSQFEKTTEVA

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=608961 LCQ72_RS01900 WP_101884684.1 384413..386236(-) (rcrQ) [Mediterraneibacter gnavus strain NBRC 114413]
ATGCCTAGACATGGACATATGGGTCCGCAAGGAGCGGATGAAAAAGCAAAGGATTTAAAGGGAACACTTAAGAAATTGCT
TCATTATATGAGTGTATTCAAGGTGCAGATGCTGTTGATCGTGATCTTTGCAGTCTGCGGAACAACATTTACGATTATCG
GACCAAAGATTCTTGGAAAAGCAACAACGGAAATTGCCAACGGTCTGATGAGCAAAGTATCCGGCGGAAGCGGGATGGAC
TTTGAAAAGATTGGACAGATCCTGCTGCTGACACTTGCATTATATCTGGTCAGCACATTGTGCTCGTTTATTCAGGGATA
TCTGATGACGGGGGTTTCTCAGAAAACAACATACCGTTTGCGAAAAGAAATCTCAGAGAAGATCAATCGTATGCCGATGA
ACTATTTTGATACAAAACCAGTCGGAGAAGTGTTATCCAGAGTGACCAATGATGTTGATACACTGGGACAGAGTCTGAAC
CAGAGTGCGACACAGATGATTCAATCCGTGACAACGCTGATTGGGGTGCTGATCATGATGCTTACGATCAGTCCTTTGAT
GACACTTGTGACACTGATTATTCTCCCGATTTCCATGCTGCTGATCGGATTTGTCATGAAGCATTCTCAGAAATATTTCC
GCGGACAGCAGGAGTATCTGGGAAATGTGAATGGACAGGTGGAAGAAGTTTACAGTGGTCACAGTATTATCAAGGCTTTT
AATAAAGAAGAAAATGTAATTGATGAGTTTGATGCAACCAATGACAAATTGTATGACTCTGCATGGAAATCGCAGTTCTT
TTCAGGAATGATGATGCCGATCATGCAGTTTATCGGAAATCTTGGCTATGTAGTCGTTGCGATTCTGGGAGGATTTCTGA
CGATCAAGAAAACGATTGAAGTGGGAGATATTCAGTCTTTCATTCAATATGTCAGAAGTTTTACACAGCCGATCCAGCAG
ATCGCACAGGTTGCAAATATGCTGCAGATGACAGCTGCGGCGTCCGAGAGAGTGTTTGAATTTCTGGAGGAAGAAGAGGA
AGATCAGACTGTGGAGCATCCGGTATCGGTAGAAAATCTGGAAGGAAATGTAAGCTTTGATCATGTTCATTTTGGATACA
ATGCGGATAGGATCATTGTCAATGACTTCTCAGCAGAAGTAAAAGAGGGGCAGAAAATTGCAATTGTAGGACCGACCGGA
GCAGGAAAGACAACGATGATCAAGCTTCTGATGCGATTCTACGATGTAAACAGCGGTGCGATCAAGATTGACGGACATGA
CGTCAGAGATTTCAACAGAAGTGAACTGCGTGAAATGTTTGGAATGGTGCTGCAGGATACCTGGCTGTTCAATGGAAGTA
TTTGGGACAACATCAAATACGGAAAACTGGATGCAACGGATGAAGAAGTGATCCAGGCAGCCAAGGCAGCTCATGTGCAT
CAGTTTGTGAAGACACTGCCGGGCGGATATGATATGGAACTGAATGAAGAAGCAAACAATGTGTCTCAGGGTCAGAAACA
GCTGTTGACGATCGCGAGGGCAATTCTGGCAGATCCGAAGATCCTGATTCTGGATGAGGCGACAAGTTCTGTAGATACAA
GGACAGAGGTATTGATCCAGAAAGCCATGGATAACCTGATGAAGGGACGTACCAGCTTTGTGATTGCTCATCGTCTGTCA
ACGATTCGGGATGCAGATATGATCCTTGTTATGAAAGACGGAGATATCGTAGAGCAGGGAAATCACGAAGAACTTCTGGC
AAAAGGCGGATTCTATGCGGATCTGTATAACTCACAGTTTGAGAAAACAACGGAAGTGGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-317)

ABC transporter (ABC_tran)

(381-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N5NV65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.034

97.199

0.506