Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EL269_RS05880 Genome accession   NZ_AP018935
Coordinates   1108048..1109781 (-) Length   577 a.a.
NCBI ID   WP_000647640.1    Uniprot ID   Q8DZN1
Organism   Streptococcus agalactiae strain HU-GS5823     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103048..1114781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL269_RS05850 (SAGS_1109) coaC 1103350..1103892 (+) 543 WP_000595814.1 phosphopantothenoylcysteine decarboxylase -
  EL269_RS05855 (SAGS_1110) - 1103938..1104510 (+) 573 WP_000728786.1 ECF transporter S component -
  EL269_RS05860 (SAGS_1111) - 1104620..1106338 (+) 1719 WP_000222547.1 phospho-sugar mutase -
  EL269_RS05870 (SAGS_1113) - 1106410..1107755 (+) 1346 WP_370862946.1 IS3-like element IS861 family transposase -
  EL269_RS05875 (SAGS_1114) - 1107837..1108034 (-) 198 WP_000746856.1 hypothetical protein -
  EL269_RS05880 (SAGS_1115) rcrQ 1108048..1109781 (-) 1734 WP_000647640.1 ABC transporter ATP-binding protein Regulator
  EL269_RS05885 (SAGS_1116) - 1109782..1111503 (-) 1722 WP_000826931.1 ABC transporter ATP-binding protein -
  EL269_RS05890 (SAGS_1117) - 1111515..1112117 (-) 603 WP_000472259.1 lysozyme family protein -
  EL269_RS05895 (SAGS_1118) - 1112119..1113096 (-) 978 WP_000968655.1 nucleoid-associated protein -
  EL269_RS05900 (SAGS_1119) glyA 1113101..1114357 (-) 1257 WP_000575546.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64304.10 Da        Isoelectric Point: 8.1077

>NTDB_id=60896 EL269_RS05880 WP_000647640.1 1108048..1109781(-) (rcrQ) [Streptococcus agalactiae strain HU-GS5823]
MKASHPKKIQKKLVQDLLSKKSLVGMALLGTVVQVCLTVYLPVLIGQAVDVVLSPHSMILLLPIMWKMIAVILANTIIQW
INPLLYNRLIFHYVASLRKAVMEKLNLLPIAYLDKRGIGDLISRVTTDTEQLSNGLLMVFNQFFVGLLTIIVTIFSMAKI
DLLMLFLVLFLTPLSLFLARFIAKKSYHLYQNQTASRGRQTQFIEEMVSQESLIQAFSAQEESSDHFRTINQEYANFSQS
AIFYSSTVNPSTRFINSLIYGFLAGIGALRIMSGAFSVGQLITFLNYVNQYTKPFNDISSVLSEMQSALACAERLYSILE
ESSPNITGTEKLDSSTVKGQIDFKNVVFGYNKSKLLLNGINLHIPAGAKVAIVGPTGAGKSTLINLIMRFYEVDGGNILL
DCKPITDYEPSQLRQEIGMVLQETWLKSATIHDNIAYANPKASREEVIEAAKAANADFFIKQLPNGYDTYLEDAGDSLSQ
GQCQLLTIARIFLKLPRILILDEATSSIDTRTEVLVQEAFQMLMKGRTSFIIAHRLSTIQTADIILVMVSGEIVEVGNHS
ELMAQKGIYYQMQNAQK

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=60896 EL269_RS05880 WP_000647640.1 1108048..1109781(-) (rcrQ) [Streptococcus agalactiae strain HU-GS5823]
ATGAAAGCAAGTCATCCTAAAAAGATACAAAAAAAGCTTGTTCAAGATCTTCTTTCTAAAAAAAGCTTAGTAGGAATGGC
ATTATTAGGGACGGTTGTACAAGTTTGCCTCACTGTTTATTTGCCTGTTCTAATTGGACAAGCGGTAGACGTTGTATTAT
CGCCTCATTCTATGATATTATTGTTACCTATAATGTGGAAGATGATTGCAGTCATTTTAGCAAATACTATTATTCAATGG
ATTAATCCTCTGCTCTATAACCGCTTAATTTTTCATTATGTTGCTTCTTTAAGAAAGGCTGTAATGGAAAAGTTGAATCT
ATTGCCTATAGCTTACCTTGATAAACGTGGCATAGGTGACTTGATTAGTCGTGTGACTACCGATACGGAGCAATTATCAA
ATGGTTTATTAATGGTTTTTAACCAGTTCTTTGTTGGTTTATTAACTATTATAGTTACTATTTTTAGTATGGCAAAGATT
GATTTATTAATGCTTTTTTTGGTATTATTTCTGACGCCTTTATCACTCTTTCTAGCCCGCTTTATTGCTAAAAAGAGTTA
TCACTTATATCAAAATCAAACGGCATCACGAGGACGACAAACTCAATTCATTGAAGAGATGGTGAGTCAAGAAAGCCTTA
TTCAAGCATTCAGTGCGCAAGAAGAAAGTAGTGATCATTTTAGGACTATTAATCAAGAGTATGCTAACTTTTCTCAATCA
GCAATTTTTTATTCTTCAACTGTCAATCCATCAACCCGATTTATCAATAGTTTGATTTATGGCTTCTTAGCTGGGATTGG
TGCCCTTCGCATTATGTCAGGGGCTTTTAGTGTTGGTCAATTAATCACTTTCTTAAATTATGTCAATCAATATACTAAGC
CATTTAATGACATCTCTTCCGTCCTGTCTGAGATGCAAAGTGCTCTGGCGTGTGCAGAACGCCTTTACTCTATTTTAGAA
GAATCGTCACCAAATATAACAGGTACAGAAAAACTTGATTCATCAACGGTCAAAGGTCAAATCGATTTTAAAAACGTTGT
TTTTGGTTATAATAAATCAAAACTACTATTGAATGGTATTAATTTACACATTCCAGCAGGAGCTAAGGTCGCTATTGTAG
GACCAACAGGTGCTGGGAAGTCTACTTTAATCAATTTAATAATGCGTTTCTATGAAGTTGACGGGGGAAATATCCTTTTA
GATTGTAAGCCTATTACTGATTATGAGCCATCACAATTAAGGCAAGAAATTGGAATGGTATTACAAGAAACGTGGTTAAA
AAGTGCTACGATTCACGATAACATTGCATATGCCAATCCTAAAGCTAGCCGTGAAGAAGTGATAGAGGCTGCAAAAGCAG
CTAATGCAGATTTCTTTATCAAACAATTACCGAATGGATATGATACGTATTTAGAAGATGCTGGAGATTCGTTATCACAG
GGGCAATGTCAGCTATTGACAATTGCTCGTATTTTTCTTAAATTACCTAGAATATTGATATTAGATGAGGCGACATCGTC
TATAGATACTCGTACTGAAGTTCTTGTTCAAGAAGCATTCCAAATGTTGATGAAGGGGAGAACAAGCTTTATTATTGCAC
ATCGCTTATCTACCATTCAAACGGCAGATATTATTTTAGTTATGGTATCTGGTGAAATTGTAGAAGTGGGTAACCACTCT
GAATTAATGGCTCAAAAAGGTATTTATTATCAAATGCAAAATGCACAAAAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(25-294)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DZN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.814

97.92

0.36

Multiple sequence alignment