Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LCH16_RS08610 Genome accession   NZ_CP083943
Coordinates   1714789..1715568 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain CSUSB3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709789..1720568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS08590 (LCH16_08590) trmFO 1710476..1711783 (+) 1308 WP_061890598.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LCH16_RS08595 (LCH16_08595) xerC 1711853..1712770 (+) 918 WP_039251511.1 tyrosine recombinase XerC -
  LCH16_RS08600 (LCH16_08600) hslV 1712786..1713331 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  LCH16_RS08605 (LCH16_08605) hslU 1713348..1714751 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  LCH16_RS08610 (LCH16_08610) codY 1714789..1715568 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LCH16_RS08615 (LCH16_08615) flgB 1715922..1716311 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  LCH16_RS08620 (LCH16_08620) flgC 1716311..1716763 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  LCH16_RS08625 (LCH16_08625) fliE 1716774..1717094 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  LCH16_RS08630 (LCH16_08630) fliF 1717137..1718747 (+) 1611 WP_061890600.1 flagellar basal-body MS-ring/collar protein FliF -
  LCH16_RS08635 (LCH16_08635) fliG 1718760..1719776 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  LCH16_RS08640 (LCH16_08640) fliH 1719769..1720524 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=608671 LCH16_RS08610 WP_003154263.1 1714789..1715568(+) (codY) [Bacillus velezensis strain CSUSB3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=608671 LCH16_RS08610 WP_003154263.1 1714789..1715568(+) (codY) [Bacillus velezensis strain CSUSB3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471