Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   K8M08_RS21895 Genome accession   NZ_CP083749
Coordinates   4210473..4211252 (+) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus sp. CRB-7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4205473..4216252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8M08_RS21875 (K8M08_21875) trmFO 4206127..4207431 (+) 1305 WP_003267294.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  K8M08_RS21880 (K8M08_21880) xerC 4207497..4208396 (+) 900 WP_001101227.1 tyrosine recombinase XerC -
  K8M08_RS21885 (K8M08_21885) hslV 4208439..4208981 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  K8M08_RS21890 (K8M08_21890) hslU 4209004..4210395 (+) 1392 WP_000550082.1 ATP-dependent protease ATPase subunit HslU -
  K8M08_RS21895 (K8M08_21895) codY 4210473..4211252 (+) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  K8M08_RS21900 (K8M08_21900) rpsB 4211602..4212303 (+) 702 WP_000111483.1 30S ribosomal protein S2 -
  K8M08_RS21905 (K8M08_21905) tsf 4212407..4213294 (+) 888 WP_001018581.1 translation elongation factor Ts -
  K8M08_RS21910 (K8M08_21910) pyrH 4213361..4214083 (+) 723 WP_000042663.1 UMP kinase -
  K8M08_RS21915 (K8M08_21915) frr 4214086..4214643 (+) 558 WP_000531501.1 ribosome recycling factor -
  K8M08_RS21920 (K8M08_21920) uppS 4214729..4215505 (+) 777 WP_000971302.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=607672 K8M08_RS21895 WP_000421288.1 4210473..4211252(+) (codY) [Bacillus sp. CRB-7]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=607672 K8M08_RS21895 WP_000421288.1 4210473..4211252(+) (codY) [Bacillus sp. CRB-7]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAATAGTGCTTACACAGCATTTCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459