Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   K8M08_RS18985 Genome accession   NZ_CP083749
Coordinates   3675768..3678107 (+) Length   779 a.a.
NCBI ID   WP_000941258.1    Uniprot ID   A0A5C5ABS1
Organism   Bacillus sp. CRB-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3670768..3683107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8M08_RS18970 (K8M08_18970) - 3671648..3671932 (+) 285 WP_000886980.1 post-transcriptional regulator -
  K8M08_RS18975 (K8M08_18975) secDF 3672203..3674467 (+) 2265 WP_001119089.1 protein translocase subunit SecDF -
  K8M08_RS18980 (K8M08_18980) - 3674773..3675666 (+) 894 WP_224465567.1 cation diffusion facilitator family transporter -
  K8M08_RS18985 (K8M08_18985) recJ 3675768..3678107 (+) 2340 WP_000941258.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  K8M08_RS18990 (K8M08_18990) - 3678155..3678667 (+) 513 WP_000346214.1 adenine phosphoribosyltransferase -
  K8M08_RS18995 (K8M08_18995) relA 3678877..3681060 (+) 2184 WP_001262810.1 GTP diphosphokinase -
  K8M08_RS19000 (K8M08_19000) - 3681078..3681518 (+) 441 WP_001266954.1 D-tyrosyl-tRNA(Tyr) deacylase -
  K8M08_RS19005 (K8M08_19005) - 3681706..3681882 (+) 177 WP_001242605.1 hypothetical protein -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88211.82 Da        Isoelectric Point: 4.8746

>NTDB_id=607663 K8M08_RS18985 WP_000941258.1 3675768..3678107(+) (recJ) [Bacillus sp. CRB-7]
MLQPKTRWKEKEYNGERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSEDPEEAKELAEEIDELNKL
RKDIVKKITEEAIAEVETNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANVAELPKEKITMVYFSEEVLHKFSLEDYKEYMMHASEVTELDDQYIVFLDLPKGTDELRE
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKSPFSLRQYGEQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=607663 K8M08_RS18985 WP_000941258.1 3675768..3678107(+) (recJ) [Bacillus sp. CRB-7]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGGCGAGCGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGACTAGATACAGAAGATAAAATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACGACTGTGTTATATCTTGCTTTGCAAGAATT
AGGTGCAGATGTAGAATTTTATATCCCAAACCGTTTTACAGAAGGTTATGGACCAAACGAAGAAGCATTTCGTTGGGCGC
ATAGCGCAGGATTCTCATTAATTATTACTGTCGATACTGGTATCGCAGCTGTACATGAAGCGAAAGTAGCGAAGGAACTT
GGGATAGATCTAATTATTACAGATCACCATGAGCCGCCACCAGAATTGCCAGAAGCACTTGCGATTATTCACCCGAAATT
AGATGGCGGTGTGTATCCGTTTCACTATTTAGCGGGCGTTGGTGTTGCGTTTAAAGTTGCGCATGCACTACTGGGCCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATTGGTACAGTGGCTGATTTAGTATCACTTCATGGTGAGAATAGATTGCTA
GTGAAGCGCGGTTTAAAACATATGCGCATGACGAAAAATATCGGACTAAAGGCGCTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGTATTGGCTTCTCAATCGCACCTCGTATTAATGCAGTTGGACGTTTAGAAGATGCTACGC
CGGCTGTACATCTTTTATTATCAGAGGATCCGGAAGAAGCGAAAGAGTTGGCTGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGAAAATTACAGAAGAAGCTATCGCCGAAGTGGAAACAAATTTTCCGCCTGAAGACAATAAAGT
ATTAGTGCTTGCAAAAGAAGGATGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CGACGATTGTATTATGCATTGATCCTGTAAAAGAAACTGCAAAAGGTTCAGCGCGTAGTATAGCGGGATTCGATTTGTTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGACATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTACGCCGCCGTTTAAATGAGCAAGCAGAGGTAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CTGTTGATGTTTTTTGTAAAGTGGAGGACGTAACACTTGCAGCAATTGAAGATATGCAAAAGTTGGCGCCATTTGGTGTT
GGAAATCCAAAGCCACGTATTGCGGTGAAGGATGCAGAGTTAGAAAGTATTCGTGCAATTGGATCCGACGGTTCACATTT
AAAAATGGCTCTTCGTGATGGACAAGCAACATTGGATACAATTGGATTTGGATTTGGTGCGTATGCAAAAGAAATTTCTC
CAGTTGCAAAAGTCTCTGTAATTGGGGAAGCGTCTATTAATGAATGGAATAATTTTAAGAAGCCACAACTAATGGTACAA
GATATTGCTGTAGAGGCATGGCAATTATTTGATTGGCGCAGTATGCGTAACGTAGAAGCAAATGTGGCAGAACTTCCGAA
AGAAAAAATAACGATGGTGTATTTTTCTGAAGAGGTATTGCATAAATTTTCTTTAGAAGACTATAAAGAGTATATGATGC
ATGCATCAGAAGTAACAGAATTAGATGATCAATACATCGTGTTCCTTGATTTGCCAAAAGGAACAGATGAATTACGAGAG
TTATTTAAAGTAGGGTTCCCGTCGCGAATCTATACACTATTTTATCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGAGAACACTTTAAATGGTATTATTCGTTCTTGAGCCAAAAATCACCATTTTCTTTAAGACAATATGGAGAACAACTAT
GTCAACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C5ABS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.842

99.358

0.525