Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JMUB1273_RS08145 Genome accession   NZ_AP018922
Coordinates   1630603..1631877 (+) Length   424 a.a.
NCBI ID   WP_000102740.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JMUB1273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1625603..1636877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB1273_RS08115 (JMUB1273_1519) mnmA 1625805..1626923 (-) 1119 WP_000066092.1 tRNA 2-thiouridine(34) synthase MnmA -
  JMUB1273_RS08120 (JMUB1273_1520) - 1626924..1628066 (-) 1143 WP_000409158.1 cysteine desulfurase family protein -
  JMUB1273_RS08125 (JMUB1273_1521) - 1628378..1629391 (+) 1014 WP_000985895.1 LLM class flavin-dependent oxidoreductase -
  JMUB1273_RS08130 (JMUB1273_1522) - 1629628..1629774 (-) 147 WP_000009238.1 SAS049 family protein -
  JMUB1273_RS08135 (JMUB1273_1523) - 1629814..1629996 (-) 183 WP_119267456.1 CsbD family protein -
  JMUB1273_RS08140 (JMUB1273_1524) cymR 1630096..1630518 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  JMUB1273_RS08145 (JMUB1273_1526) rarA 1630603..1631877 (+) 1275 WP_000102740.1 replication-associated recombination protein A Machinery gene
  JMUB1273_RS08150 (JMUB1273_1527) - 1632038..1632811 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  JMUB1273_RS08155 - 1632811..1632939 (-) 129 WP_001790559.1 hypothetical protein -
  JMUB1273_RS08165 (JMUB1273_1528) aspS 1633272..1635038 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  JMUB1273_RS08170 (JMUB1273_1529) hisS 1635054..1636316 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47264.84 Da        Isoelectric Point: 8.3539

>NTDB_id=60719 JMUB1273_RS08145 WP_000102740.1 1630603..1631877(+) (rarA) [Staphylococcus aureus strain JMUB1273]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=60719 JMUB1273_RS08145 WP_000102740.1 1630603..1631877(+) (rarA) [Staphylococcus aureus strain JMUB1273]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686

Multiple sequence alignment