Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   LA331_RS04245 Genome accession   NZ_CP083658
Coordinates   864833..865459 (-) Length   208 a.a.
NCBI ID   WP_005236133.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 859833..870459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS04215 (LA331_04215) - 860196..860630 (-) 435 WP_004783989.1 SRPBCC family protein -
  LA331_RS04220 (LA331_04220) tadA 860693..861208 (-) 516 WP_005236129.1 tRNA adenosine(34) deaminase TadA -
  LA331_RS04225 (LA331_04225) - 861215..862336 (-) 1122 WP_004783991.1 enoyl-CoA hydratase/isomerase family protein -
  LA331_RS04230 (LA331_04230) ung 862333..863046 (-) 714 WP_005236130.1 uracil-DNA glycosylase -
  LA331_RS04235 (LA331_04235) - 863092..863688 (-) 597 WP_005236131.1 6-pyruvoyl trahydropterin synthase family protein -
  LA331_RS04240 (LA331_04240) gspK 863847..864818 (-) 972 WP_005236132.1 type II secretion system minor pseudopilin GspK -
  LA331_RS04245 (LA331_04245) xcpW 864833..865459 (-) 627 WP_005236133.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LA331_RS04250 (LA331_04250) gspI 865456..866040 (-) 585 WP_171065451.1 type II secretion system minor pseudopilin GspI -
  LA331_RS04255 (LA331_04255) - 866030..866578 (-) 549 WP_005236134.1 pilus assembly FimT family protein -
  LA331_RS04260 (LA331_04260) - 866597..867202 (-) 606 WP_005236135.1 TetR/AcrR family transcriptional regulator -
  LA331_RS04265 (LA331_04265) - 867243..868016 (-) 774 WP_005236141.1 TatD family hydrolase -
  LA331_RS04270 (LA331_04270) - 868044..868385 (-) 342 WP_005236142.1 PilZ domain-containing protein -
  LA331_RS04275 (LA331_04275) - 868403..869383 (-) 981 WP_005236144.1 hypothetical protein -
  LA331_RS04280 (LA331_04280) kdsB 869398..870159 (-) 762 WP_005236146.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23970.25 Da        Isoelectric Point: 4.7542

>NTDB_id=607170 LA331_RS04245 WP_005236133.1 864833..865459(-) (xcpW) [Acinetobacter variabilis strain FDAARGOS_1487]
MKSKGFTLVELLVAIAIFAVLSALSWKVFDYIIQTKDRNAVHEQRLSQLQDTYQQILRDTVQAVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERVEYQYRADEQKLYRLKYRNLNQTGRDQPESSVLLSDVEQFQIVVLNPNEMTQWPD
SSFDLNQVEQKQRLPKGIKINLMVNGVSYEWIFSLLNTDFLLETQKLT

Nucleotide


Download         Length: 627 bp        

>NTDB_id=607170 LA331_RS04245 WP_005236133.1 864833..865459(-) (xcpW) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGAAGTCAAAGGGATTTACGCTGGTCGAACTACTGGTTGCTATTGCTATTTTCGCCGTACTGTCTGCTCTAAGCTGGAA
AGTATTTGATTATATTATACAAACCAAAGACCGTAATGCGGTGCATGAACAGCGCTTAAGTCAGTTGCAAGATACTTATC
AGCAGATCTTGCGTGATACGGTACAGGCGGTGCCTTTAACGGCCAATATTAATGGTGATATTCAGCCGGCACTGGTTTTG
CAAAACGGGCGTTTTAACTTTAGTAAGACTGGAGTTACCGATCCTCTGGAAGAGGGGATTTCTCCAGATGAACGGGTTGA
ATATCAGTACCGGGCAGATGAACAAAAACTATATCGCTTGAAATACCGGAATTTAAACCAGACCGGTCGTGATCAACCTG
AATCCAGTGTGTTGTTGTCCGATGTTGAGCAGTTTCAGATCGTAGTGCTTAATCCGAATGAAATGACCCAATGGCCAGAC
TCATCATTTGATTTAAATCAGGTTGAGCAAAAACAGCGCTTGCCCAAAGGCATTAAAATCAACTTAATGGTTAATGGGGT
CAGTTATGAGTGGATTTTCAGTTTATTGAATACAGATTTCCTGCTTGAAACCCAAAAGTTAACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

59.701

96.635

0.577