Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LA327_RS09970 Genome accession   NZ_CP083622
Coordinates   2038829..2040682 (-) Length   617 a.a.
NCBI ID   WP_003537635.1    Uniprot ID   B0N5N8
Organism   Thomasclavelia ramosa strain FDAARGOS_1519     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2025739..2045390 2038829..2040682 within 0


Gene organization within MGE regions


Location: 2025739..2045390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA327_RS09895 (LA327_09895) - 2025739..2027439 (-) 1701 WP_008791667.1 bifunctional DNA primase/polymerase -
  LA327_RS09900 (LA327_09900) - 2027436..2027795 (-) 360 WP_008791666.1 plasmid mobilization protein -
  LA327_RS09905 (LA327_09905) - 2027776..2028873 (-) 1098 WP_008791665.1 site-specific integrase -
  LA327_RS09910 (LA327_09910) - 2028860..2029060 (-) 201 WP_008791664.1 hypothetical protein -
  LA327_RS09915 (LA327_09915) - 2029264..2029842 (+) 579 WP_008791663.1 helix-turn-helix domain-containing protein -
  LA327_RS09920 (LA327_09920) guaA 2030005..2031552 (-) 1548 WP_008791662.1 glutamine-hydrolyzing GMP synthase -
  LA327_RS09925 (LA327_09925) - 2031564..2032835 (-) 1272 WP_008791661.1 adenylosuccinate synthase -
  LA327_RS09930 (LA327_09930) - 2033006..2033893 (+) 888 WP_008791660.1 LysR family transcriptional regulator -
  LA327_RS09935 (LA327_09935) - 2033928..2034179 (-) 252 WP_008791659.1 hypothetical protein -
  LA327_RS09940 (LA327_09940) - 2034189..2035259 (-) 1071 WP_003537650.1 competence/damage-inducible protein A -
  LA327_RS09945 (LA327_09945) - 2035500..2035655 (-) 156 WP_003537648.1 DUF6323 family protein -
  LA327_RS09950 (LA327_09950) - 2035798..2035980 (-) 183 WP_224209002.1 hypothetical protein -
  LA327_RS09955 (LA327_09955) - 2036144..2036983 (-) 840 WP_008791658.1 DUF368 domain-containing protein -
  LA327_RS09960 (LA327_09960) - 2037048..2037422 (-) 375 WP_008791657.1 DUF3795 domain-containing protein -
  LA327_RS09965 (LA327_09965) - 2037432..2038754 (-) 1323 WP_008791656.1 replication-associated recombination protein A -
  LA327_RS09970 (LA327_09970) rcrQ 2038829..2040682 (-) 1854 WP_003537635.1 ABC transporter ATP-binding protein Regulator
  LA327_RS09975 (LA327_09975) - 2040675..2042903 (-) 2229 WP_008791655.1 ABC transporter ATP-binding protein -
  LA327_RS09980 (LA327_09980) - 2042903..2043355 (-) 453 WP_003537632.1 MarR family winged helix-turn-helix transcriptional regulator -
  LA327_RS18800 - 2043782..2043904 (-) 123 WP_008791654.1 hypothetical protein -
  LA327_RS09985 (LA327_09985) - 2044073..2044492 (-) 420 WP_008791653.1 C-GCAxxG-C-C family protein -
  LA327_RS09990 (LA327_09990) - 2044584..2045390 (-) 807 WP_008791652.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 67852.03 Da        Isoelectric Point: 5.2739

>NTDB_id=606719 LA327_RS09970 WP_003537635.1 2038829..2040682(-) (rcrQ) [Thomasclavelia ramosa strain FDAARGOS_1519]
MSNQPKRNGPKFGPGGMHGMRGGEKAKDFKGTLGKLFKYLRPYYFRLVIVVIFASASTVFAIVGPKILAKATDKLSEGIM
AKVAGTGGIDFDYIGQIILILVGLYLISALFSYIQGFITSTISQRVAYDLRTSISQKMDRMPLSYFDKHTSGDILSRVTN
DIDTIAQSLNQSMSQVITSTVTVIGIFIMMLTISPVMTLIAVCVLPVSMVLIGLVMKRSQKYFARQQAALGDVNGHIEEM
YGGHNVVKAFNGEAASVEQFNEYNDNLYESAWKSQFFSGLMQPITGFVGNVGYVAVCLLGGVLAGGGSITIGDIQAFIQY
VRQFNQPITQLAQTMNMLQSTAAAAERVFEFLGEEELEPETPKVTADEVAKVEGSVTFADVNFGYLKDQTIINDFSLHVH
AGQTVAIVGPTGAGKTTIVKLLMRFYELNSGSILIDGKDIRDFGRQDLRSLFGMVLQDTWLFNGTIKENLMYGKLDASDE
EVKEACKVAYVDHFVQTLENGYETMINEESSNISQGQKQLLTIARAFLKDPKILILDEATSSVDTRTEVLIQKGMEKLME
GRTSFVIAHRLSTIRDADTIIVMKDGDIVELGNHDSLLAKDGFYASLYRSQFEGSDE

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=606719 LA327_RS09970 WP_003537635.1 2038829..2040682(-) (rcrQ) [Thomasclavelia ramosa strain FDAARGOS_1519]
ATGAGTAATCAACCAAAAAGAAATGGTCCTAAATTCGGACCTGGTGGTATGCACGGAATGCGTGGCGGTGAAAAAGCTAA
AGATTTTAAAGGTACTTTAGGTAAATTATTTAAATATTTAAGACCGTATTATTTTCGTTTAGTTATAGTTGTGATTTTTG
CTTCAGCATCAACGGTTTTTGCAATCGTAGGACCAAAGATTTTAGCTAAAGCAACAGATAAATTAAGTGAAGGTATCATG
GCTAAAGTAGCTGGTACTGGTGGAATTGATTTTGATTATATTGGTCAAATTATTTTGATTTTAGTTGGATTGTATTTGAT
TAGTGCTTTATTTAGTTATATACAAGGTTTTATTACTTCAACTATTTCACAACGAGTTGCTTATGATTTAAGAACATCAA
TTTCTCAAAAGATGGATCGGATGCCATTAAGTTATTTTGATAAACATACTAGTGGTGATATTTTAAGCCGAGTAACAAAT
GATATCGATACAATCGCACAATCACTAAATCAAAGTATGTCACAGGTAATTACGTCGACAGTAACGGTAATTGGAATCTT
TATCATGATGTTGACTATTTCACCAGTTATGACTTTGATCGCAGTTTGCGTATTACCAGTATCAATGGTTTTGATTGGTT
TAGTAATGAAACGTTCACAAAAATATTTTGCGCGTCAACAAGCTGCTTTAGGTGATGTCAATGGTCATATTGAAGAAATG
TATGGTGGTCATAATGTGGTTAAAGCATTTAATGGTGAAGCTGCTTCAGTAGAACAATTTAATGAGTATAATGATAATTT
ATATGAAAGTGCTTGGAAGTCACAATTCTTTTCGGGTTTGATGCAGCCAATCACAGGATTTGTTGGAAATGTTGGATACG
TTGCGGTATGTTTATTAGGTGGTGTTCTTGCTGGTGGTGGTAGTATCACAATTGGTGATATTCAGGCCTTTATTCAATAT
GTAAGACAATTTAATCAACCAATAACACAATTAGCACAGACAATGAATATGTTACAAAGTACAGCAGCAGCGGCTGAACG
TGTTTTTGAATTTTTAGGTGAAGAAGAATTAGAACCAGAAACACCAAAAGTTACTGCTGATGAGGTGGCTAAAGTTGAAG
GTTCTGTTACCTTTGCTGATGTTAATTTTGGGTATTTAAAAGATCAAACGATTATTAATGATTTTAGTTTACATGTTCAT
GCGGGGCAAACTGTTGCAATTGTAGGACCGACTGGTGCTGGAAAAACAACGATCGTAAAATTATTAATGCGATTCTATGA
ATTAAATAGTGGTTCGATTCTTATTGATGGTAAAGATATTCGTGATTTTGGACGTCAGGATTTACGATCATTATTTGGAA
TGGTTTTACAAGATACTTGGTTGTTTAATGGAACAATTAAGGAAAACCTAATGTATGGAAAATTAGATGCAAGTGATGAA
GAAGTCAAGGAGGCTTGTAAAGTCGCTTATGTTGATCATTTTGTACAAACATTAGAGAATGGATATGAAACAATGATCAA
TGAGGAATCATCTAACATTTCTCAAGGGCAAAAACAACTTTTAACAATTGCACGTGCTTTCTTAAAAGATCCAAAAATTT
TGATTCTTGATGAAGCAACTTCTTCAGTAGATACAAGAACAGAAGTATTAATTCAAAAAGGAATGGAAAAGCTAATGGAG
GGAAGAACAAGTTTTGTCATTGCCCATCGTTTATCAACAATTCGTGATGCTGACACAATTATTGTAATGAAAGATGGTGA
CATTGTAGAACTTGGAAATCATGATTCATTATTGGCTAAAGATGGCTTCTATGCCTCATTGTATCGTTCTCAATTCGAGG
GATCAGATGAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(47-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0N5N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.316

94.489

0.494