Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LAU42_RS06765 Genome accession   NZ_CP083608
Coordinates   1300079..1302469 (-) Length   796 a.a.
NCBI ID   WP_224182873.1    Uniprot ID   -
Organism   Macrococcus armenti strain JEK37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1295079..1307469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAU42_RS06745 (LAU42_06745) - 1296142..1296453 (-) 312 WP_224182870.1 DUF1292 domain-containing protein -
  LAU42_RS06750 (LAU42_06750) ruvX 1296469..1296888 (-) 420 WP_224182871.1 Holliday junction resolvase RuvX -
  LAU42_RS06755 (LAU42_06755) - 1296881..1297126 (-) 246 WP_224184767.1 IreB family regulatory phosphoprotein -
  LAU42_RS06760 (LAU42_06760) alaS 1297206..1299830 (-) 2625 WP_224182872.1 alanine--tRNA ligase -
  LAU42_RS06765 (LAU42_06765) recD2 1300079..1302469 (-) 2391 WP_224182873.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LAU42_RS06770 (LAU42_06770) - 1302472..1303131 (-) 660 WP_224182874.1 tetratricopeptide repeat protein -
  LAU42_RS06775 (LAU42_06775) mnmA 1303232..1304347 (-) 1116 WP_224182875.1 tRNA 2-thiouridine(34) synthase MnmA -
  LAU42_RS06780 (LAU42_06780) - 1304359..1305486 (-) 1128 WP_224182876.1 cysteine desulfurase family protein -
  LAU42_RS06785 (LAU42_06785) - 1305657..1306652 (+) 996 WP_224182877.1 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90295.83 Da        Isoelectric Point: 4.6240

>NTDB_id=606579 LAU42_RS06765 WP_224182873.1 1300079..1302469(-) (recD2) [Macrococcus armenti strain JEK37]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIVTHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKKSLDQIPKLSDEKKDLIYNTIYDNQAIEKIM
IQLNEFGFGPQLAMKIYQFYKEDTLKIINESPYQLVIDIDGIGFNKADELAGKLGIDNNHPERLKAALIFTIEQASIQNG
HTYIPDQVLLETSFNLLTKNGSQVDPDKLVIALTELTEEHKLVNHEKNIYIPSLFYSETKAVQILHRLMNHKEQVKQFEQ
SEVLLAIGELESLFEVSYAERQKDALVTAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDFPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTRENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQL
PSVGPGQVFKDMIDAQIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYNDRSFIPCSSNQIPEVIEKIVRSAVK
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPNDEKKRELQFGDLYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEVTHAYCCSIHKSQGSEFPIVIMPVVNQYFRMLQKNILYTGLTRAKQSLIFCG
DVQAFNEGIKRIGNARFTSFYQFLIDYFKTEDEDNIHDKRSGNALPFNVGEMTENNMHLVDPMINMGEISPYDFMS

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=606579 LAU42_RS06765 WP_224182873.1 1300079..1302469(-) (recD2) [Macrococcus armenti strain JEK37]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTTAAAGGGACAATAACGAGAATATTATTTTATAACAATGATAATTT
CTATACTGTGCTAAAAGCAGAAGTGATTGAATCAAACGAAGATTTCGATGATGATGCTACGATTACAGGTTATCTCCCGC
AAATTGCTGAAGGTGATACATATACGTTTACAGGTAAGATTGTAACGCATCCGAAGTACGGAAAGCAGTTACAGGCAGAT
AAGTTTGAGAAGGATATGCCTCAGTCACGTGACGGTATTATTCATTATTTATCGAGTGATTTGTTTAAAGGTGTCGGTAA
GAAAACGGCAAGAACGATTGTTGAAGTGCTCGGAGAAGATGCATTAAACATCATACTTGATGATAAAAAGAGTCTTGACC
AAATCCCGAAGTTATCTGATGAGAAAAAAGACTTAATATATAATACGATATATGATAATCAGGCAATTGAGAAAATTATG
ATTCAGCTGAATGAATTTGGTTTCGGGCCACAGCTTGCGATGAAGATTTATCAGTTTTATAAGGAAGACACATTAAAAAT
CATTAATGAATCCCCGTATCAGCTCGTCATAGATATTGACGGAATCGGGTTTAATAAGGCAGATGAACTAGCAGGTAAGC
TAGGTATTGATAACAATCATCCCGAACGTCTGAAAGCAGCACTGATTTTTACGATTGAACAAGCTTCAATTCAAAATGGA
CATACTTATATTCCAGATCAAGTATTACTTGAAACGAGCTTTAATTTACTGACGAAAAATGGTAGTCAAGTTGATCCCGA
CAAACTCGTAATTGCACTTACTGAGCTGACTGAGGAACACAAACTTGTTAATCATGAAAAGAACATTTATATTCCGAGCC
TCTTTTACTCTGAAACGAAAGCTGTCCAGATATTGCATCGATTAATGAATCATAAAGAGCAAGTTAAGCAGTTTGAACAG
TCTGAAGTGCTGCTTGCAATCGGGGAACTGGAATCACTGTTTGAAGTAAGTTATGCAGAACGTCAGAAAGATGCGCTCGT
TACTGCGATGAATTCAAAACTGATGATCTTAACAGGAGGACCTGGTACAGGGAAAACGACTGTCGTACGTGGTATCGTTA
ATTTATATGCTGAGCTTCATGGCTTAAGCCTTGATTATGATGATTATGATGGACAGGATTTCCCAATTGTAGTTGCAGCA
CCTACAGGTCGTGCTTCAAAGCGTCTTCAGGAATCAACAGGACTTGAAGCGACGACAATACACAGATTAATTGGCTGGAC
GAGAGAGAATAAACCTGATGATGTTCTTGAAACTGAGATAACAGCGAAGCTCGTCATTATCGATGAAATGTCGATGGTTG
ATACGTGGCTTATGTTTCAGCTTATGAAAGCAGTGCCAAACGATGCACAGATTATCTTTGTCGGTGACCAGGACCAGTTA
CCTTCAGTCGGACCAGGACAAGTATTTAAAGATATGATTGATGCACAAATTATGCCGCAAATTGAACTGAATGAAGTGTA
CCGACAGCAGGAAGGCTCATCTATCGTTGAGCTTGCGCATCAAATTAAACGTAATGAGCCATTTGATATTACGAAGCGTT
ATAATGATAGAAGTTTTATACCGTGCTCAAGCAATCAAATTCCGGAAGTAATAGAGAAAATTGTACGCAGTGCAGTAAAA
AAAGGATATGATATGCGCGATATACAAGTGCTCGCGCCGATATACAGAGGGCCAGCCGGTATACGAGCATTGAATAAAGT
GCTGCAGGAAATATTAAATCCAAATGATGAGAAAAAGCGTGAACTGCAGTTTGGCGACTTATATTTCAGAACTGGTGATA
AAGTACTGCAACTTGTCAATCGGCCAGAGGACAATGTATTTAACGGAGATATCGGTGAAGTGACAGGTATTTTTATGGCA
GCAGAGAATGCGCTCAATAAAGATGTTGTAATTGTAGATTATGACGGGAGTGAAGTAACATATACGAAAGCAGATTTAAT
GGAAGTTACGCACGCATACTGCTGTTCTATCCATAAATCACAAGGATCAGAATTCCCGATTGTAATCATGCCGGTCGTCA
ATCAGTACTTTAGAATGTTACAGAAAAACATACTGTATACTGGTTTAACACGCGCAAAGCAATCGCTTATATTTTGTGGG
GATGTACAGGCGTTTAATGAAGGGATTAAACGTATCGGAAACGCTAGATTTACGAGCTTCTATCAGTTTCTGATAGATTA
TTTCAAAACTGAAGATGAAGATAATATTCATGATAAACGCAGTGGAAATGCACTACCGTTTAATGTCGGTGAGATGACAG
AAAACAATATGCACCTTGTTGATCCGATGATTAATATGGGGGAAATTTCACCATATGATTTTATGAGTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(338-544)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.368

100

0.519