Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LAU43_RS07185 Genome accession   NZ_CP083595
Coordinates   1354832..1357222 (-) Length   796 a.a.
NCBI ID   WP_224185011.1    Uniprot ID   -
Organism   Macrococcus armenti strain 17Msa1131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1349832..1362222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAU43_RS07165 (LAU43_07165) - 1350894..1351205 (-) 312 WP_224182870.1 DUF1292 domain-containing protein -
  LAU43_RS07170 (LAU43_07170) ruvX 1351221..1351640 (-) 420 WP_224185009.1 Holliday junction resolvase RuvX -
  LAU43_RS07175 (LAU43_07175) - 1351633..1351878 (-) 246 WP_224184767.1 IreB family regulatory phosphoprotein -
  LAU43_RS07180 (LAU43_07180) alaS 1351958..1354582 (-) 2625 WP_224185010.1 alanine--tRNA ligase -
  LAU43_RS07185 (LAU43_07185) recD2 1354832..1357222 (-) 2391 WP_224185011.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LAU43_RS07190 (LAU43_07190) - 1357225..1357884 (-) 660 WP_224182874.1 tetratricopeptide repeat protein -
  LAU43_RS07195 (LAU43_07195) mnmA 1357985..1359100 (-) 1116 WP_224182875.1 tRNA 2-thiouridine(34) synthase MnmA -
  LAU43_RS07200 (LAU43_07200) - 1359112..1360239 (-) 1128 WP_224185012.1 cysteine desulfurase family protein -
  LAU43_RS07205 (LAU43_07205) - 1360410..1361405 (+) 996 WP_224185013.1 LLM class flavin-dependent oxidoreductase -
  LAU43_RS07210 (LAU43_07210) cymR 1361557..1361979 (-) 423 WP_224185014.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90265.74 Da        Isoelectric Point: 4.6240

>NTDB_id=606469 LAU43_RS07185 WP_224185011.1 1354832..1357222(-) (recD2) [Macrococcus armenti strain 17Msa1131]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIVTHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKKSLDQIPKLSDEKKDLIYNTIYDNQAIEKIM
IQLNEFGFGPQLAMKIYQFYKEDTLKIINESPYQLVIDIDGIGFNKADELAGKLGIDNNHPERLKAALIFTIEQASIQNG
HTYIPDQVLLETSFNLLTKNGSQVDPDKLVIALTELTEEHKLVNHEKNIYIPSLFYSETKAVQILHRLMNHKEQVKQFEQ
SEVLLAIGELESLFEVSYAERQKDALVTAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDFPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTRENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQL
PSVGPGQVFKDMIDAQIIPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYNDRSFIPCSSNQIPEVIEKIVRSAVK
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPNDEKKRELQFGDIYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEVTHAYCCSIHKSQGSEFPIVIMPVVNQYFRMLQKNILYTGLTRAKQSLIFCG
DVQAFNEGIKRIGNARFTSFYQFLIDYFKTEDEDNTHDKRSGNALPFNVGEMTENNMHLVDPMINMGEISPYDFMS

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=606469 LAU43_RS07185 WP_224185011.1 1354832..1357222(-) (recD2) [Macrococcus armenti strain 17Msa1131]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTTAAAGGGACAATAACGAGAATATTATTTTATAACAATGATAATTT
CTATACTGTGCTAAAAGCAGAAGTGATTGAATCAAACGAAGATTTCGATGATGATGCTACGATTACAGGTTATCTCCCGC
AAATTGCTGAAGGTGATACATATACGTTTACAGGTAAGATTGTAACGCATCCGAAGTACGGAAAGCAGTTACAGGCAGAT
AAGTTTGAGAAGGATATGCCTCAGTCACGTGACGGTATTATTCATTATTTATCGAGTGATTTGTTTAAAGGTGTCGGTAA
GAAAACGGCAAGAACGATTGTTGAAGTGCTCGGAGAAGATGCATTAAACATCATACTTGATGATAAAAAGAGTCTTGACC
AAATCCCGAAGTTATCTGATGAGAAAAAAGACTTAATATATAATACGATATATGATAATCAGGCAATTGAGAAAATTATG
ATTCAGCTGAATGAATTTGGTTTCGGGCCACAGCTTGCGATGAAGATTTATCAGTTTTATAAGGAAGACACATTAAAAAT
CATTAATGAATCCCCGTATCAGCTCGTCATAGATATTGACGGAATCGGGTTTAATAAGGCAGATGAACTAGCAGGTAAGC
TAGGTATTGATAACAATCATCCCGAACGTCTGAAAGCAGCACTGATTTTTACGATTGAACAAGCTTCAATTCAAAATGGA
CATACTTATATTCCAGATCAAGTATTACTTGAAACGAGCTTTAATTTACTGACGAAAAACGGTAGTCAAGTTGATCCCGA
CAAACTCGTAATTGCACTTACTGAGCTGACTGAGGAACACAAACTTGTTAATCATGAAAAGAACATTTATATTCCGAGCC
TCTTTTACTCTGAAACGAAAGCTGTCCAGATATTGCATCGATTAATGAATCATAAAGAGCAAGTTAAGCAGTTTGAACAG
TCTGAAGTGCTGCTTGCAATCGGGGAACTGGAATCATTATTTGAAGTAAGTTATGCAGAACGTCAGAAAGATGCGCTCGT
TACTGCGATGAATTCAAAACTGATGATCTTAACAGGAGGACCTGGTACAGGGAAAACGACTGTCGTGCGTGGTATCGTTA
ATTTATATGCTGAGCTTCATGGCTTAAGCCTTGATTATGATGATTATGATGGACAGGATTTCCCAATTGTAGTTGCAGCA
CCTACAGGTCGCGCTTCAAAGCGTCTTCAGGAATCAACAGGACTTGAAGCGACGACAATACACAGATTAATTGGCTGGAC
GAGAGAGAATAAACCTGATGATGTTCTTGAAACTGAGATAACTGCGAAGCTCGTCATTATTGATGAAATGTCGATGGTCG
ATACGTGGCTTATGTTTCAGCTCATGAAAGCTGTGCCAAACGATGCACAAATTATATTTGTGGGTGACCAGGACCAGTTA
CCTTCAGTCGGACCAGGACAAGTATTTAAAGATATGATTGATGCACAAATTATACCGCAAATTGAACTGAATGAAGTGTA
CCGACAGCAGGAAGGCTCATCTATCGTTGAGCTTGCGCATCAAATTAAACGTAATGAGCCATTTGATATTACGAAGCGTT
ATAATGATAGAAGTTTTATACCGTGCTCAAGCAATCAAATTCCGGAAGTAATAGAGAAAATTGTACGCAGTGCAGTAAAA
AAAGGATATGATATGCGCGATATACAAGTGCTCGCGCCGATATACAGAGGGCCAGCCGGTATACGAGCATTGAATAAAGT
GCTGCAGGAAATATTAAATCCAAATGATGAGAAAAAACGTGAACTGCAGTTTGGAGACATATATTTCAGAACTGGTGATA
AAGTACTGCAACTTGTCAATCGGCCAGAGGACAATGTATTTAACGGAGATATCGGTGAAGTGACAGGTATTTTTATGGCA
GCAGAGAATGCGCTCAATAAAGATGTTGTAATTGTAGATTATGACGGGAGTGAAGTAACATATACGAAAGCAGATTTAAT
GGAAGTTACGCACGCATACTGCTGTTCTATCCATAAATCACAAGGATCAGAATTCCCGATTGTAATCATGCCGGTCGTCA
ATCAGTACTTTAGAATGTTACAGAAAAACATACTGTATACTGGTTTAACACGCGCAAAGCAATCGCTTATATTTTGTGGG
GATGTACAGGCGTTTAATGAAGGGATTAAACGTATCGGAAACGCTAGATTTACGAGCTTCTATCAGTTTCTGATAGATTA
TTTCAAAACTGAAGATGAAGATAATACTCATGATAAACGCAGTGGAAATGCACTACCGTTTAATGTCGGTGAGATGACAG
AAAACAATATGCACCTTGTTGATCCGATGATTAATATGGGGGAAATTTCACCATATGATTTTATGAGTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

AAA domain (AAA_30)

(338-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.311

100

0.516