Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABEDC_RS06030 Genome accession   NZ_CP083571
Coordinates   1215508..1216149 (+) Length   213 a.a.
NCBI ID   WP_253172794.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1210508..1221149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS05995 (ABEDC_1250) kdsB 1210839..1211600 (+) 762 WP_253172789.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABEDC_RS06000 (ABEDC_1251) - 1211615..1212595 (+) 981 WP_005106565.1 DNA polymerase III, delta' subunit -
  ABEDC_RS06005 (ABEDC_1252) - 1212611..1212952 (+) 342 WP_004278877.1 PilZ domain-containing protein -
  ABEDC_RS06010 (ABEDC_1253) - 1212980..1213753 (+) 774 WP_005106566.1 TatD family hydrolase -
  ABEDC_RS06015 (ABEDC_1254) - 1213795..1214409 (+) 615 WP_005252237.1 TetR/AcrR family transcriptional regulator -
  ABEDC_RS06020 (ABEDC_1255) - 1214419..1214970 (+) 552 WP_253172792.1 type II secretion system protein -
  ABEDC_RS06025 gspI 1214960..1215511 (+) 552 WP_374952684.1 type II secretion system minor pseudopilin GspI -
  ABEDC_RS06030 (ABEDC_1257) xcpW 1215508..1216149 (+) 642 WP_253172794.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABEDC_RS06035 (ABEDC_1258) gspK 1216156..1217127 (+) 972 WP_374952685.1 type II secretion system minor pseudopilin GspK -
  ABEDC_RS06040 (ABEDC_1259) - 1217280..1217876 (+) 597 WP_044109536.1 6-carboxytetrahydropterin synthase -
  ABEDC_RS06045 (ABEDC_1260) ung 1217923..1218636 (+) 714 WP_005247316.1 uracil-DNA glycosylase -
  ABEDC_RS06050 (ABEDC_1261) - 1218633..1219754 (+) 1122 WP_148334422.1 enoyl-CoA hydratase/isomerase family protein -
  ABEDC_RS06055 (ABEDC_1262) tadA 1219761..1220276 (+) 516 WP_004278860.1 tRNA adenosine(34) deaminase TadA -
  ABEDC_RS06060 (ABEDC_1263) - 1220337..1220768 (+) 432 WP_004278856.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24310.54 Da        Isoelectric Point: 4.6438

>NTDB_id=606233 ABEDC_RS06030 WP_253172794.1 1215508..1216149(+) (xcpW) [Acinetobacter lwoffii strain ED9-5a]
MKPKGFTLVELMVAIAIFAVLSALGWKVFDYIVKTKDQNVIHEQRLGQLQQTYQQILRDTVQAVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERIEYQYRADEQKLYRLKYRNLNQTGQDQPESSVLLSEVEQFQIIVLNPNELTQWPD
ASADLNQLEHKQRLPKGIKINLTVNGVSYEWMFSLLNTDFLLDTQNTGQPSSE

Nucleotide


Download         Length: 642 bp        

>NTDB_id=606233 ABEDC_RS06030 WP_253172794.1 1215508..1216149(+) (xcpW) [Acinetobacter lwoffii strain ED9-5a]
ATGAAGCCTAAAGGATTTACCCTAGTTGAATTAATGGTCGCAATTGCGATCTTTGCGGTGCTGTCTGCTTTGGGCTGGAA
AGTTTTTGATTATATTGTCAAAACCAAAGATCAGAATGTGATTCATGAACAGCGTCTAGGTCAGTTACAACAAACCTATC
AGCAGATTCTGCGAGATACCGTACAGGCAGTACCCTTAACGGCCAATATCAATGGGGATATTCAGCCGGCTCTGGTGCTG
CAGAACGGACGCTTTAATTTCAGTAAAACCGGGGTAACTGATCCTTTGGAAGAAGGGATTTCCCCAGATGAGCGCATTGA
ATATCAGTATCGAGCCGATGAGCAGAAGCTTTATCGCCTGAAATACCGGAATCTGAATCAGACAGGTCAAGATCAGCCCG
AATCCAGTGTTTTATTGTCGGAAGTGGAACAATTTCAGATCATCGTACTTAATCCGAATGAACTCACGCAATGGCCGGAT
GCTTCTGCTGATCTGAATCAGTTAGAGCATAAACAGCGTTTGCCTAAAGGGATTAAAATCAATTTAACCGTGAATGGTGT
AAGTTATGAATGGATGTTCAGTTTATTGAATACGGACTTTTTGCTTGATACTCAGAACACCGGTCAACCCAGCTCAGAAT
AA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.706

94.366

0.554