Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HK81_RS24745 Genome accession   NC_021848
Coordinates   2757586..2758311 (+) Length   241 a.a.
NCBI ID   WP_020904371.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus O1:K33 str. CDC_K4557     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2752586..2763311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK81_RS20600 (M636_21045) - 2753691..2756012 (+) 2322 WP_020904369.1 Tex family protein -
  HK81_RS20605 (M636_21050) - 2756146..2756610 (-) 465 WP_005459035.1 hypothetical protein -
  HK81_RS20610 (M636_21055) bioH 2756734..2757501 (-) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  HK81_RS24745 (M636_21060) comF 2757586..2758311 (+) 726 WP_020904371.1 amidophosphoribosyltransferase Machinery gene
  HK81_RS20615 (M636_21065) nfuA 2758409..2758993 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  HK81_RS20620 (M636_21070) nudE 2759214..2759783 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  HK81_RS20625 (M636_21075) cysQ 2759825..2760652 (+) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HK81_RS20630 (M636_21080) - 2760938..2761699 (-) 762 WP_020904372.1 type II secretion system protein N -
  HK81_RS20635 (M636_21085) - 2761701..2762192 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27718.92 Da        Isoelectric Point: 8.9991

>NTDB_id=60593 HK81_RS24745 WP_020904371.1 2757586..2758311(+) (comF) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=60593 HK81_RS24745 WP_020904371.1 2757586..2758311(+) (comF) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment