Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   LAE73_RS06800 Genome accession   NZ_CP083379
Coordinates   1283175..1283690 (+) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain C203115     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1278175..1288690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE73_RS06775 (LAE73_06750) - 1278631..1278969 (+) 339 WP_002777761.1 hypothetical protein -
  LAE73_RS06780 (LAE73_06755) - 1278978..1279703 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  LAE73_RS06785 (LAE73_06760) dxr 1279700..1280776 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  LAE73_RS06790 (LAE73_06765) - 1280773..1282167 (+) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  LAE73_RS06795 (LAE73_06770) tsaD 1282164..1283171 (+) 1008 WP_002838047.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  LAE73_RS06800 (LAE73_06775) ctsG 1283175..1283690 (+) 516 WP_002780549.1 type II secretion system protein Machinery gene
  LAE73_RS06805 (LAE73_06780) - 1283690..1284931 (+) 1242 WP_223375566.1 DUF2920 family protein -
  LAE73_RS06810 (LAE73_06785) - 1284941..1286755 (+) 1815 WP_223375567.1 motility associated factor glycosyltransferase family protein -
  LAE73_RS06815 (LAE73_06790) - 1286852..1287064 (+) 213 Protein_1341 flagellin -
  LAE73_RS06820 (LAE73_06795) ant(9) 1287120..1287897 (+) 778 Protein_1342 aminoglycoside nucleotidyltransferase ANT(9) -
  LAE73_RS06825 (LAE73_06800) - 1288033..1288446 (+) 414 Protein_1343 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=605527 LAE73_RS06800 WP_002780549.1 1283175..1283690(+) (ctsG) [Campylobacter coli strain C203115]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=605527 LAE73_RS06800 WP_002780549.1 1283175..1283690(+) (ctsG) [Campylobacter coli strain C203115]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918