Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   LAE75_RS06965 Genome accession   NZ_CP083378
Coordinates   1297360..1297875 (+) Length   171 a.a.
NCBI ID   WP_002801535.1    Uniprot ID   -
Organism   Campylobacter coli strain C203112     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1292360..1302875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE75_RS06940 (LAE75_06885) - 1292816..1293154 (+) 339 WP_224027362.1 hypothetical protein -
  LAE75_RS06945 (LAE75_06890) - 1293163..1293888 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  LAE75_RS06950 (LAE75_06895) dxr 1293885..1294961 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  LAE75_RS06955 (LAE75_06900) - 1294958..1296352 (+) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  LAE75_RS06960 (LAE75_06905) tsaD 1296349..1297356 (+) 1008 WP_004283557.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  LAE75_RS06965 (LAE75_06910) ctsG 1297360..1297875 (+) 516 WP_002801535.1 type II secretion system protein Machinery gene
  LAE75_RS06970 (LAE75_06915) - 1297875..1299116 (+) 1242 WP_224027363.1 DUF2920 family protein -
  LAE75_RS06975 - 1299126..1301159 (+) 2034 WP_224027364.1 methyl-accepting chemotaxis protein -
  LAE75_RS06980 (LAE75_06935) - 1301156..1302142 (+) 987 Protein_1357 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  LAE75_RS06985 (LAE75_06940) - 1302087..1302758 (-) 672 Protein_1358 6-hydroxymethylpterin diphosphokinase MptE-like protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18996.99 Da        Isoelectric Point: 8.4861

>NTDB_id=605503 LAE75_RS06965 WP_002801535.1 1297360..1297875(+) (ctsG) [Campylobacter coli strain C203112]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFRVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=605503 LAE75_RS06965 WP_002801535.1 1297360..1297875(+) (ctsG) [Campylobacter coli strain C203112]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAGGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCTAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

78.363

100

0.784