Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K9N54_RS00650 Genome accession   NZ_CP083361
Coordinates   140370..141095 (-) Length   241 a.a.
NCBI ID   WP_069537396.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 135370..146095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS00625 (K9N54_00630) - 136489..136980 (+) 492 WP_005458943.1 type II secretion system protein M -
  K9N54_RS00630 (K9N54_00635) - 136982..137743 (+) 762 WP_024703495.1 type II secretion system protein N -
  K9N54_RS00635 (K9N54_00640) cysQ 138029..138856 (-) 828 WP_086585136.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  K9N54_RS00640 (K9N54_00645) nudE 138898..139467 (-) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  K9N54_RS00645 (K9N54_00650) nfuA 139688..140272 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  K9N54_RS00650 (K9N54_00655) comF 140370..141095 (-) 726 WP_069537396.1 ComF family protein Machinery gene
  K9N54_RS00655 (K9N54_00660) bioH 141180..141947 (+) 768 WP_029843267.1 pimeloyl-ACP methyl ester esterase BioH -
  K9N54_RS00660 (K9N54_00665) - 142071..142535 (+) 465 WP_005459035.1 hypothetical protein -
  K9N54_RS00665 (K9N54_00670) - 142671..144992 (-) 2322 WP_015296085.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27736.89 Da        Isoelectric Point: 8.9991

>NTDB_id=605356 K9N54_RS00650 WP_069537396.1 140370..141095(-) (comF) [Vibrio parahaemolyticus strain 20-082E4]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=605356 K9N54_RS00650 WP_069537396.1 140370..141095(-) (comF) [Vibrio parahaemolyticus strain 20-082E4]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAACGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485