Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BCBL_RS09550 Genome accession   NZ_CP083257
Coordinates   2255135..2256964 (-) Length   609 a.a.
NCBI ID   WP_011068648.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. longum strain BCBL-583     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2250135..2261964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCBL_RS10130 - 2250325..2250702 (+) 378 WP_007052935.1 hypothetical protein -
  BCBL_RS09530 (BCBL_1918) rsmI 2250729..2251739 (-) 1011 WP_032746934.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BCBL_RS09540 (BCBL_1920) - 2252437..2253855 (-) 1419 WP_011068650.1 MFS transporter -
  BCBL_RS09545 (BCBL_1921) - 2253937..2254983 (+) 1047 WP_165507036.1 FAD:protein FMN transferase -
  BCBL_RS09550 (BCBL_1922) rcrQ 2255135..2256964 (-) 1830 WP_011068648.1 ABC transporter ATP-binding protein Regulator
  BCBL_RS09555 (BCBL_1923) rcrP 2257178..2259049 (-) 1872 WP_223616635.1 ABC transporter ATP-binding protein Regulator
  BCBL_RS09560 (BCBL_1924) - 2259236..2259757 (-) 522 WP_032684783.1 MarR family winged helix-turn-helix transcriptional regulator -
  BCBL_RS09565 - 2260217..2260459 (+) 243 WP_013410549.1 hypothetical protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66695.93 Da        Isoelectric Point: 5.6488

>NTDB_id=605133 BCBL_RS09550 WP_011068648.1 2255135..2256964(-) (rcrQ) [Bifidobacterium longum subsp. longum strain BCBL-583]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESDKSALLGTNGHEVKGDVEFSHVQFGYEPGKPIINDFSASVSAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTNKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=605133 BCBL_RS09550 WP_011068648.1 2255135..2256964(-) (rcrQ) [Bifidobacterium longum subsp. longum strain BCBL-583]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGTTTCCTTGAAGAGCC
GGAGATGGAGGACGAATCCGACAAGTCCGCTTTGCTTGGGACCAACGGCCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATTATCAACGACTTCTCCGCTTCAGTCTCGGCCGGTCAGAAGGTCGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTACGAGATTTCCGGCGGTTCGAT
TTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACGT
GGGTGTTCCGTGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCTGGCGTGACCAACAAGCAAATCGAGGATGCGTGC
AAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CCTCGGTCGATACCCGTACTGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGCCGTACGAGCTTTGTGATC
GCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
CGACGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.017

96.059

0.519