Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NLY76_RS01735 Genome accession   NZ_CP100430
Coordinates   359718..360506 (+) Length   262 a.a.
NCBI ID   WP_044676283.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 354718..365506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS01715 (NLY76_01715) - 355335..356294 (-) 960 WP_014637479.1 asparaginase -
  NLY76_RS01720 (NLY76_01720) - 356364..357729 (+) 1366 Protein_299 Cof-type HAD-IIB family hydrolase -
  NLY76_RS01725 (NLY76_01725) - 357745..358197 (-) 453 WP_004195772.1 universal stress protein -
  NLY76_RS01730 (NLY76_01730) - 358352..359566 (+) 1215 WP_044676285.1 pyridoxal phosphate-dependent aminotransferase -
  NLY76_RS01735 (NLY76_01735) codY 359718..360506 (+) 789 WP_044676283.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NLY76_RS01740 (NLY76_01740) - 360508..361059 (+) 552 WP_044676291.1 cysteine hydrolase family protein -
  NLY76_RS01745 (NLY76_01745) rplS 361325..361672 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  NLY76_RS01750 (NLY76_01750) - 361858..362532 (+) 675 WP_012774968.1 hydrolase -
  NLY76_RS01755 (NLY76_01755) gatC 362749..363051 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  NLY76_RS01760 (NLY76_01760) gatA 363051..364517 (+) 1467 WP_044676282.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29360.45 Da        Isoelectric Point: 4.6190

>NTDB_id=604986 NLY76_RS01735 WP_044676283.1 359718..360506(+) (codY) [Streptococcus suis strain LSS42]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRLTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=604986 NLY76_RS01735 WP_044676283.1 359718..360506(+) (codY) [Streptococcus suis strain LSS42]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTTGAATCACG
ATTGACTTATCCAAATGGTCTGACAACGATAGCGCCTATCCATGTGACGGGAATTCGTTTTGGTTCGCTTATTATTTGGC
GAAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCAGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496