Detailed information NTG0060488

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: MCREHEC_RS25300
• Genome accession: NZ_AP018796
• Coordinates: 4904682..4905707 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain E2855
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4899682..4910707

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MCREHEC_RS25270 (E2855_04939)	zapB	4899766..4900011 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
MCREHEC_RS25275 (E2855_04940)	rraA	4900096..4900581 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
MCREHEC_RS25280 (E2855_04941)	menA	4900674..4901600 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
MCREHEC_RS25285 (E2855_04942)	hslU	4901667..4902998 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
MCREHEC_RS25290 (E2855_04943)	hslV	4903008..4903538 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
MCREHEC_RS25295 (E2855_04944)	ftsN	4903631..4904590 (-)	960	WP_000068830.1	cell division protein FtsN	-
MCREHEC_RS25300 (E2855_04945)	cytR	4904682..4905707 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
MCREHEC_RS25305 (E2855_04946)	priA	4905863..4908061 (-)	2199	WP_001341957.1	primosomal protein N'	Machinery gene
MCREHEC_RS25310 (E2855_04947)	rpmE	4908264..4908476 (+)	213	WP_000710769.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=60488 MCREHEC_RS25300 WP_000644904.1 4904682..4905707(-) (cytR) [Escherichia coli strain E2855]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=60488 MCREHEC_RS25300 WP_000644904.1 4904682..4905707(-) (cytR) [Escherichia coli strain E2855]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628