Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NKZ79_RS05525 Genome accession   NZ_CP100340
Coordinates   1093176..1094945 (-) Length   589 a.a.
NCBI ID   WP_044666698.1    Uniprot ID   -
Organism   Streptococcus suis strain STC78     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088176..1099945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ79_RS05505 (NKZ79_05505) - 1088481..1089683 (+) 1203 WP_002935153.1 IS110 family transposase -
  NKZ79_RS05510 (NKZ79_05510) thrB 1089941..1090801 (-) 861 WP_011922331.1 homoserine kinase -
  NKZ79_RS05515 (NKZ79_05515) - 1090805..1092091 (-) 1287 WP_014735888.1 homoserine dehydrogenase -
  NKZ79_RS05520 (NKZ79_05520) - 1092196..1093119 (+) 924 WP_024390336.1 polysaccharide deacetylase family protein -
  NKZ79_RS05525 (NKZ79_05525) rcrQ 1093176..1094945 (-) 1770 WP_044666698.1 ABC transporter ATP-binding protein Regulator
  NKZ79_RS05530 (NKZ79_05530) rcrP 1094954..1096690 (-) 1737 WP_024417245.1 ABC transporter ATP-binding protein Regulator
  NKZ79_RS05535 (NKZ79_05535) - 1096766..1097008 (-) 243 WP_012028079.1 KH domain-containing protein -
  NKZ79_RS05540 (NKZ79_05540) rpsP 1097030..1097302 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  NKZ79_RS05545 (NKZ79_05545) - 1097427..1097735 (-) 309 WP_024417244.1 DUF4298 domain-containing protein -
  NKZ79_RS05550 (NKZ79_05550) pcp 1097735..1098382 (-) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  NKZ79_RS05555 (NKZ79_05555) - 1098379..1099134 (-) 756 WP_024417243.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65847.83 Da        Isoelectric Point: 5.4096

>NTDB_id=604725 NKZ79_RS05525 WP_044666698.1 1093176..1094945(-) (rcrQ) [Streptococcus suis strain STC78]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=604725 NKZ79_RS05525 WP_044666698.1 1093176..1094945(-) (rcrQ) [Streptococcus suis strain STC78]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACTATCAGTGCAGTTATGAATGCATTGGAGCCCTTTGTATTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTACAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTACGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGCACATTGACGGTCGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTGCAGTCTGCAAAATCCTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCACTAGAGTTGACAGAAAGTCTGACAGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACAGGGGCAGGTAAGACTACTCTTATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGTCAGGATATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAAGATGCTTGGCTCTATGAGGGGACCATCAAGGAAAACTTACGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCATTTTATCCGTACCCTGCCTGGTGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACTCGCTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.729

100

0.438