Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NKZ79_RS01840 Genome accession   NZ_CP100340
Coordinates   353884..354672 (+) Length   262 a.a.
NCBI ID   WP_172001301.1    Uniprot ID   -
Organism   Streptococcus suis strain STC78     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 348884..359672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ79_RS01820 (NKZ79_01820) - 349182..350141 (-) 960 WP_024417782.1 asparaginase -
  NKZ79_RS01825 (NKZ79_01825) - 350211..351576 (+) 1366 Protein_319 Cof-type HAD-IIB family hydrolase -
  NKZ79_RS01830 (NKZ79_01830) - 351592..352044 (-) 453 WP_004195772.1 universal stress protein -
  NKZ79_RS01835 (NKZ79_01835) - 352199..353413 (+) 1215 WP_024417779.1 pyridoxal phosphate-dependent aminotransferase -
  NKZ79_RS01840 (NKZ79_01840) codY 353884..354672 (+) 789 WP_172001301.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NKZ79_RS01845 (NKZ79_01845) - 354674..355225 (+) 552 WP_024376330.1 cysteine hydrolase family protein -
  NKZ79_RS01850 (NKZ79_01850) - 355508..356696 (+) 1189 Protein_324 IS110 family transposase -
  NKZ79_RS01855 (NKZ79_01855) rplS 357254..357601 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  NKZ79_RS01860 (NKZ79_01860) - 357783..358457 (+) 675 WP_204101645.1 hydrolase -
  NKZ79_RS01865 (NKZ79_01865) gatC 358675..358977 (+) 303 WP_002939046.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29249.31 Da        Isoelectric Point: 4.6797

>NTDB_id=604698 NKZ79_RS01840 WP_172001301.1 353884..354672(+) (codY) [Streptococcus suis strain STC78]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAVLGELAGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=604698 NKZ79_RS01840 WP_172001301.1 353884..354672(+) (codY) [Streptococcus suis strain STC78]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
CTCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACACTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTGTTTTGGGTGAATTGGCTGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.397

100

0.584
  codY Bacillus subtilis subsp. subtilis str. 168

51.626

93.893

0.485