Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | K8Z41_RS05755 | Genome accession | NZ_CP083116 |
| Coordinates | 1073327..1074106 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421290.1 | Uniprot ID | A0A9W5VKA1 |
| Organism | Bacillus thuringiensis strain SA11 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1031881..1089552 | 1073327..1074106 | within | 0 |
Gene organization within MGE regions
Location: 1031881..1089552
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8Z41_RS05555 (K8Z41_05550) | rsmB | 1032103..1033437 (+) | 1335 | WP_001249668.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| K8Z41_RS05560 (K8Z41_05555) | rlmN | 1033442..1034530 (+) | 1089 | WP_000450541.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| K8Z41_RS05565 (K8Z41_05560) | - | 1034535..1035287 (+) | 753 | WP_000648703.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| K8Z41_RS05570 (K8Z41_05565) | pknB | 1035296..1037269 (+) | 1974 | WP_000904748.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| K8Z41_RS05575 (K8Z41_05570) | rsgA | 1037516..1038397 (+) | 882 | WP_001113932.1 | ribosome small subunit-dependent GTPase A | - |
| K8Z41_RS05580 (K8Z41_05575) | rpe | 1038400..1039044 (+) | 645 | WP_000589974.1 | ribulose-phosphate 3-epimerase | - |
| K8Z41_RS05585 (K8Z41_05580) | - | 1039114..1039794 (+) | 681 | WP_002132739.1 | thiamine diphosphokinase | - |
| K8Z41_RS05590 (K8Z41_05585) | spoVM | 1039861..1039941 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| K8Z41_RS05595 (K8Z41_05590) | rpmB | 1040015..1040203 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| K8Z41_RS05600 (K8Z41_05595) | - | 1040580..1040942 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| K8Z41_RS05605 (K8Z41_05600) | - | 1040965..1042641 (+) | 1677 | WP_000027129.1 | DAK2 domain-containing protein | - |
| K8Z41_RS05610 (K8Z41_05605) | recG | 1042932..1044980 (+) | 2049 | WP_001000811.1 | ATP-dependent DNA helicase RecG | - |
| K8Z41_RS05615 (K8Z41_05610) | fapR | 1045069..1045662 (+) | 594 | WP_000747349.1 | transcription factor FapR | - |
| K8Z41_RS05620 (K8Z41_05615) | plsX | 1045659..1046651 (+) | 993 | WP_000684098.1 | phosphate acyltransferase PlsX | - |
| K8Z41_RS05625 (K8Z41_05620) | fabD | 1046666..1047610 (+) | 945 | WP_000515905.1 | ACP S-malonyltransferase | - |
| K8Z41_RS05630 (K8Z41_05625) | fabG | 1047610..1048350 (+) | 741 | WP_000911768.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| K8Z41_RS05635 (K8Z41_05630) | acpP | 1048420..1048653 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| K8Z41_RS05640 (K8Z41_05635) | rncS | 1048712..1049449 (+) | 738 | WP_001146875.1 | ribonuclease III | - |
| K8Z41_RS05645 (K8Z41_05640) | - | 1049596..1050057 (+) | 462 | Protein_1104 | AAA family ATPase | - |
| K8Z41_RS05650 (K8Z41_05645) | ltrA | 1050761..1052566 (+) | 1806 | WP_000108316.1 | group II intron reverse transcriptase/maturase | - |
| K8Z41_RS05655 (K8Z41_05650) | smc | 1052664..1055771 (+) | 3108 | Protein_1106 | chromosome segregation protein SMC | - |
| K8Z41_RS05660 (K8Z41_05655) | ftsY | 1055787..1056776 (+) | 990 | WP_000007655.1 | signal recognition particle-docking protein FtsY | - |
| K8Z41_RS05665 (K8Z41_05660) | - | 1056910..1057242 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| K8Z41_RS05670 (K8Z41_05665) | ffh | 1057255..1058604 (+) | 1350 | WP_000863460.1 | signal recognition particle protein | - |
| K8Z41_RS05675 (K8Z41_05670) | rpsP | 1058706..1058978 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| K8Z41_RS05680 (K8Z41_05675) | - | 1058993..1059220 (+) | 228 | WP_000737401.1 | KH domain-containing protein | - |
| K8Z41_RS05685 (K8Z41_05680) | rimM | 1059341..1059856 (+) | 516 | WP_000170278.1 | ribosome maturation factor RimM | - |
| K8Z41_RS05690 (K8Z41_05685) | trmD | 1059856..1060590 (+) | 735 | WP_000686903.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| K8Z41_RS05695 (K8Z41_05690) | rplS | 1060737..1061081 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| K8Z41_RS05700 (K8Z41_05695) | lepB | 1061183..1061734 (+) | 552 | WP_000711851.1 | signal peptidase I | - |
| K8Z41_RS05705 (K8Z41_05700) | ylqF | 1061755..1062645 (+) | 891 | WP_000236702.1 | ribosome biogenesis GTPase YlqF | - |
| K8Z41_RS05710 (K8Z41_05705) | - | 1062702..1063475 (+) | 774 | WP_001193513.1 | ribonuclease HII | - |
| K8Z41_RS05715 (K8Z41_05710) | sucC | 1063670..1064830 (+) | 1161 | WP_001020791.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| K8Z41_RS05720 (K8Z41_05715) | sucD | 1064850..1065752 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| K8Z41_RS05725 (K8Z41_05720) | dprA | 1065840..1066709 (+) | 870 | WP_000818039.1 | DNA-processing protein DprA | - |
| K8Z41_RS05730 (K8Z41_05725) | topA | 1066854..1068932 (+) | 2079 | WP_001286963.1 | type I DNA topoisomerase | - |
| K8Z41_RS05735 (K8Z41_05730) | trmFO | 1068981..1070285 (+) | 1305 | WP_000213002.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| K8Z41_RS05740 (K8Z41_05735) | xerC | 1070351..1071250 (+) | 900 | WP_001101241.1 | tyrosine recombinase XerC | - |
| K8Z41_RS05745 (K8Z41_05740) | hslV | 1071293..1071835 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| K8Z41_RS05750 (K8Z41_05745) | hslU | 1071858..1073249 (+) | 1392 | WP_000550087.1 | ATP-dependent protease ATPase subunit HslU | - |
| K8Z41_RS05755 (K8Z41_05750) | codY | 1073327..1074106 (+) | 780 | WP_000421290.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| K8Z41_RS05760 (K8Z41_05755) | rpsB | 1074455..1075156 (+) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| K8Z41_RS05765 (K8Z41_05760) | tsf | 1075260..1076147 (+) | 888 | WP_001018578.1 | translation elongation factor Ts | - |
| K8Z41_RS05770 (K8Z41_05765) | pyrH | 1076214..1076936 (+) | 723 | WP_000042668.1 | UMP kinase | - |
| K8Z41_RS05775 (K8Z41_05770) | frr | 1076939..1077496 (+) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| K8Z41_RS05780 (K8Z41_05775) | uppS | 1077582..1078358 (+) | 777 | WP_000971296.1 | isoprenyl transferase | - |
| K8Z41_RS05785 (K8Z41_05780) | cdsA | 1078376..1079167 (+) | 792 | WP_000813592.1 | phosphatidate cytidylyltransferase | - |
| K8Z41_RS05790 (K8Z41_05785) | dxr | 1079191..1080333 (+) | 1143 | WP_000790372.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| K8Z41_RS05795 (K8Z41_05790) | rseP | 1080351..1081607 (+) | 1257 | WP_001090245.1 | RIP metalloprotease RseP | - |
| K8Z41_RS05800 (K8Z41_05795) | - | 1081717..1083417 (+) | 1701 | WP_000814333.1 | proline--tRNA ligase | - |
| K8Z41_RS05805 (K8Z41_05800) | - | 1083542..1087843 (+) | 4302 | WP_000060004.1 | PolC-type DNA polymerase III | - |
| K8Z41_RS05810 (K8Z41_05805) | rimP | 1088180..1088650 (+) | 471 | WP_000359096.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28793.05 Da Isoelectric Point: 4.7165
>NTDB_id=604678 K8Z41_RS05755 WP_000421290.1 1073327..1074106(+) (codY) [Bacillus thuringiensis strain SA11]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=604678 K8Z41_RS05755 WP_000421290.1 1073327..1074106(+) (codY) [Bacillus thuringiensis strain SA11]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.467 |
100 |
0.815 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |