Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | K8Z42_RS05755 | Genome accession | NZ_CP083101 |
| Coordinates | 1073130..1073909 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421290.1 | Uniprot ID | A0A9W5VKA1 |
| Organism | Bacillus thuringiensis strain ABTS-351 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1031684..1089355 | 1073130..1073909 | within | 0 |
Gene organization within MGE regions
Location: 1031684..1089355
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8Z42_RS05555 (K8Z42_05555) | rsmB | 1031906..1033240 (+) | 1335 | WP_001249668.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| K8Z42_RS05560 (K8Z42_05560) | rlmN | 1033245..1034333 (+) | 1089 | WP_000450541.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| K8Z42_RS05565 (K8Z42_05565) | - | 1034338..1035090 (+) | 753 | WP_000648703.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| K8Z42_RS05570 (K8Z42_05570) | pknB | 1035099..1037072 (+) | 1974 | WP_000904748.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| K8Z42_RS05575 (K8Z42_05575) | rsgA | 1037319..1038200 (+) | 882 | WP_001113932.1 | ribosome small subunit-dependent GTPase A | - |
| K8Z42_RS05580 (K8Z42_05580) | rpe | 1038203..1038847 (+) | 645 | WP_000589974.1 | ribulose-phosphate 3-epimerase | - |
| K8Z42_RS05585 (K8Z42_05585) | - | 1038917..1039597 (+) | 681 | WP_002132739.1 | thiamine diphosphokinase | - |
| K8Z42_RS05590 (K8Z42_05590) | spoVM | 1039664..1039744 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| K8Z42_RS05595 (K8Z42_05595) | rpmB | 1039818..1040006 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| K8Z42_RS05600 (K8Z42_05600) | - | 1040383..1040745 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| K8Z42_RS05605 (K8Z42_05605) | - | 1040768..1042444 (+) | 1677 | WP_000027129.1 | DAK2 domain-containing protein | - |
| K8Z42_RS05610 (K8Z42_05610) | recG | 1042735..1044783 (+) | 2049 | WP_001000811.1 | ATP-dependent DNA helicase RecG | - |
| K8Z42_RS05615 (K8Z42_05615) | fapR | 1044872..1045465 (+) | 594 | WP_000747349.1 | transcription factor FapR | - |
| K8Z42_RS05620 (K8Z42_05620) | plsX | 1045462..1046454 (+) | 993 | WP_000684098.1 | phosphate acyltransferase PlsX | - |
| K8Z42_RS05625 (K8Z42_05625) | fabD | 1046469..1047413 (+) | 945 | WP_000515905.1 | ACP S-malonyltransferase | - |
| K8Z42_RS05630 (K8Z42_05630) | fabG | 1047413..1048153 (+) | 741 | WP_000911768.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| K8Z42_RS05635 (K8Z42_05635) | acpP | 1048223..1048456 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| K8Z42_RS05640 (K8Z42_05640) | rncS | 1048515..1049252 (+) | 738 | WP_001146875.1 | ribonuclease III | - |
| K8Z42_RS05645 (K8Z42_05645) | - | 1049399..1049860 (+) | 462 | Protein_1103 | AAA family ATPase | - |
| K8Z42_RS05650 (K8Z42_05650) | ltrA | 1050564..1052369 (+) | 1806 | WP_000108316.1 | group II intron reverse transcriptase/maturase | - |
| K8Z42_RS05655 (K8Z42_05655) | smc | 1052467..1055574 (+) | 3108 | Protein_1105 | chromosome segregation protein SMC | - |
| K8Z42_RS05660 (K8Z42_05660) | ftsY | 1055590..1056579 (+) | 990 | WP_000007655.1 | signal recognition particle-docking protein FtsY | - |
| K8Z42_RS05665 (K8Z42_05665) | - | 1056713..1057045 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| K8Z42_RS05670 (K8Z42_05670) | ffh | 1057058..1058407 (+) | 1350 | WP_000863460.1 | signal recognition particle protein | - |
| K8Z42_RS05675 (K8Z42_05675) | rpsP | 1058509..1058781 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| K8Z42_RS05680 (K8Z42_05680) | - | 1058796..1059023 (+) | 228 | WP_000737401.1 | KH domain-containing protein | - |
| K8Z42_RS05685 (K8Z42_05685) | rimM | 1059144..1059659 (+) | 516 | WP_000170278.1 | ribosome maturation factor RimM | - |
| K8Z42_RS05690 (K8Z42_05690) | trmD | 1059659..1060393 (+) | 735 | WP_000686903.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| K8Z42_RS05695 (K8Z42_05695) | rplS | 1060540..1060884 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| K8Z42_RS05700 (K8Z42_05700) | lepB | 1060986..1061537 (+) | 552 | WP_000711851.1 | signal peptidase I | - |
| K8Z42_RS05705 (K8Z42_05705) | ylqF | 1061558..1062448 (+) | 891 | WP_000236702.1 | ribosome biogenesis GTPase YlqF | - |
| K8Z42_RS05710 (K8Z42_05710) | - | 1062505..1063278 (+) | 774 | WP_001193513.1 | ribonuclease HII | - |
| K8Z42_RS05715 (K8Z42_05715) | sucC | 1063473..1064633 (+) | 1161 | WP_001020791.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| K8Z42_RS05720 (K8Z42_05720) | sucD | 1064653..1065555 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| K8Z42_RS05725 (K8Z42_05725) | dprA | 1065643..1066512 (+) | 870 | WP_000818039.1 | DNA-processing protein DprA | - |
| K8Z42_RS05730 (K8Z42_05730) | topA | 1066657..1068735 (+) | 2079 | WP_001286963.1 | type I DNA topoisomerase | - |
| K8Z42_RS05735 (K8Z42_05735) | trmFO | 1068784..1070088 (+) | 1305 | WP_000213002.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| K8Z42_RS05740 (K8Z42_05740) | xerC | 1070154..1071053 (+) | 900 | WP_001101241.1 | tyrosine recombinase XerC | - |
| K8Z42_RS05745 (K8Z42_05745) | hslV | 1071096..1071638 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| K8Z42_RS05750 (K8Z42_05750) | hslU | 1071661..1073052 (+) | 1392 | WP_000550087.1 | ATP-dependent protease ATPase subunit HslU | - |
| K8Z42_RS05755 (K8Z42_05755) | codY | 1073130..1073909 (+) | 780 | WP_000421290.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| K8Z42_RS05760 (K8Z42_05760) | rpsB | 1074258..1074959 (+) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| K8Z42_RS05765 (K8Z42_05765) | tsf | 1075063..1075950 (+) | 888 | WP_001018578.1 | translation elongation factor Ts | - |
| K8Z42_RS05770 (K8Z42_05770) | pyrH | 1076017..1076739 (+) | 723 | WP_000042668.1 | UMP kinase | - |
| K8Z42_RS05775 (K8Z42_05775) | frr | 1076742..1077299 (+) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| K8Z42_RS05780 (K8Z42_05780) | uppS | 1077385..1078161 (+) | 777 | WP_000971296.1 | isoprenyl transferase | - |
| K8Z42_RS05785 (K8Z42_05785) | cdsA | 1078179..1078970 (+) | 792 | WP_000813592.1 | phosphatidate cytidylyltransferase | - |
| K8Z42_RS05790 (K8Z42_05790) | dxr | 1078994..1080136 (+) | 1143 | WP_000790372.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| K8Z42_RS05795 (K8Z42_05795) | rseP | 1080154..1081410 (+) | 1257 | WP_001090245.1 | RIP metalloprotease RseP | - |
| K8Z42_RS05800 (K8Z42_05800) | - | 1081520..1083220 (+) | 1701 | WP_000814333.1 | proline--tRNA ligase | - |
| K8Z42_RS05805 (K8Z42_05805) | - | 1083345..1087646 (+) | 4302 | WP_000060004.1 | PolC-type DNA polymerase III | - |
| K8Z42_RS05810 (K8Z42_05810) | rimP | 1087983..1088453 (+) | 471 | WP_000359096.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28793.05 Da Isoelectric Point: 4.7165
>NTDB_id=604626 K8Z42_RS05755 WP_000421290.1 1073130..1073909(+) (codY) [Bacillus thuringiensis strain ABTS-351]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=604626 K8Z42_RS05755 WP_000421290.1 1073130..1073909(+) (codY) [Bacillus thuringiensis strain ABTS-351]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.467 |
100 |
0.815 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |