Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NKZ80_RS05520 Genome accession   NZ_CP100330
Coordinates   1092657..1094393 (-) Length   578 a.a.
NCBI ID   WP_024417245.1    Uniprot ID   -
Organism   Streptococcus suis strain STC85     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087657..1099393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ80_RS05505 (NKZ80_05505) - 1088508..1089794 (-) 1287 WP_014735888.1 homoserine dehydrogenase -
  NKZ80_RS05510 (NKZ80_05510) - 1089899..1090822 (+) 924 WP_024390336.1 polysaccharide deacetylase family protein -
  NKZ80_RS05515 (NKZ80_05515) rcrQ 1090879..1092648 (-) 1770 WP_044666698.1 ABC transporter ATP-binding protein Regulator
  NKZ80_RS05520 (NKZ80_05520) rcrP 1092657..1094393 (-) 1737 WP_024417245.1 ABC transporter ATP-binding protein Regulator
  NKZ80_RS05525 (NKZ80_05525) - 1094469..1094711 (-) 243 WP_012028079.1 KH domain-containing protein -
  NKZ80_RS05530 (NKZ80_05530) rpsP 1094733..1095005 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  NKZ80_RS05535 (NKZ80_05535) - 1095130..1095438 (-) 309 WP_024417244.1 DUF4298 domain-containing protein -
  NKZ80_RS05540 (NKZ80_05540) pcp 1095438..1096085 (-) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  NKZ80_RS05545 (NKZ80_05545) - 1096082..1096837 (-) 756 WP_024417243.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65128.41 Da        Isoelectric Point: 5.1942

>NTDB_id=604226 NKZ80_RS05520 WP_024417245.1 1092657..1094393(-) (rcrP) [Streptococcus suis strain STC85]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWTGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALAPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
EGITESDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=604226 NKZ80_RS05520 WP_024417245.1 1092657..1094393(-) (rcrP) [Streptococcus suis strain STC85]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTGTTTGTAGT
GGTAAACTTGGGCTTGCCAACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGACGTTAGTCAGCTCTATT
TCTGGACGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAGTTA
ACTACAAATATCGTCAAGGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTAAAACTAG
GTATTATTACCCCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCCATGCCGTTTCTAGTTTTTGTTATTTTCTATGTGGCAACAAAAACTCGTCCTCTCTCTGAAAAACAACAAAAACG
TTTGGACACCATTAACCAATATGTTCGTGAAAATCTCATGGGCTTGCGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAAATTATCATTGCTATGATTGTAGCCATTGTCTGGTTCGCATTGGCTCCTTTGCAAACAGGTAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAAGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GAAGGTATTACTGAATCAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTGCTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAACAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCACAACGTGTTGGAACCATTATGG
ATGCCGACCAGATCATCGTGCTGAACGAAGGTGAAATCGTTGGTCGCGGTACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398