Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NKZ63_RS10520 Genome accession   NZ_CP100326
Coordinates   2100019..2101803 (-) Length   594 a.a.
NCBI ID   WP_024417148.1    Uniprot ID   -
Organism   Streptococcus suis strain STC90     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2095019..2106803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ63_RS10490 (NKZ63_10490) - 2095356..2095802 (-) 447 WP_012775372.1 LytTR family DNA-binding domain-containing protein -
  NKZ63_RS10495 (NKZ63_10495) - 2095980..2096738 (-) 759 WP_002939965.1 TIGR00266 family protein -
  NKZ63_RS10500 (NKZ63_10500) - 2096946..2097440 (-) 495 WP_024417299.1 carbonic anhydrase -
  NKZ63_RS10505 (NKZ63_10505) radA 2097564..2098931 (-) 1368 WP_172057894.1 DNA repair protein RadA Machinery gene
  NKZ63_RS10510 (NKZ63_10510) - 2098938..2099469 (-) 532 Protein_2036 histidine phosphatase family protein -
  NKZ63_RS10515 (NKZ63_10515) - 2099474..2099917 (-) 444 WP_074390173.1 dUTP diphosphatase -
  NKZ63_RS10520 (NKZ63_10520) rcrQ 2100019..2101803 (-) 1785 WP_024417148.1 ABC transporter ATP-binding protein Regulator
  NKZ63_RS10525 (NKZ63_10525) - 2101804..2103510 (-) 1707 WP_172001149.1 ABC transporter ATP-binding protein -
  NKZ63_RS10530 (NKZ63_10530) rcrR 2103503..2103952 (-) 450 WP_012027921.1 MarR family transcriptional regulator Regulator
  NKZ63_RS10535 (NKZ63_10535) - 2104174..2105190 (+) 1017 WP_024381196.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  NKZ63_RS10540 (NKZ63_10540) galU 2105235..2106134 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 66110.18 Da        Isoelectric Point: 5.3962

>NTDB_id=604062 NKZ63_RS10520 WP_024417148.1 2100019..2101803(-) (rcrQ) [Streptococcus suis strain STC90]
MKTLRFFWFYFKRYKLSFAVIFLAIVAATYLQVKTPVFLGNAIAEMGKIGQAYFAAEQIGQSGFKPDLSDFNGVMLNLFF
AYAATVVASLIYTLLFTRIVAHSTNRMRKGLFGKLERLTVAFFDSHKDGDILSRFTSDLDNIQNAFNQSLTQVVTNIALY
VGMVIMMFRQDTRLALVTIASTPVALIALVVIIRLSRKYTDKQQAAVSKLNAYMDEKISGQKAIIVQGVQEETIDGFLEL
NEEVRRTTFKGRLFGGILFPFMNGMSLVNTAIVIFAGSSIVLNDSSLETAAALGLVVTFVQYSQQYYQPIMQIASSWAEL
QLAFTGAHRIQEMFDEPEEVRAQNAPLFTELKEGVEIKDIDFGYLPGQKVLDKVSISAPKGKMVAVVGPTGSGKTTIMNL
INRFYDVNGGSVAFDGRDIREYDLDSLRDKVGIVLQESVLFSGTIADNIRFGDESISQEMVETAARATHIHDFIMSLPEG
YETFVTDDENVFSTGQKQLISIARTLLTDPQVLILDEATSNVDTVTEAKIQKAMEAIIAGRTSFVIAHRLKTILNADEII
VLKDGKVIEQGNHSQLLKLNGFYAELYHNQFVFE

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=604062 NKZ63_RS10520 WP_024417148.1 2100019..2101803(-) (rcrQ) [Streptococcus suis strain STC90]
ATGAAAACACTTAGATTTTTCTGGTTTTATTTTAAACGCTATAAACTGTCCTTTGCTGTGATTTTTCTAGCCATTGTGGC
AGCGACCTACCTGCAGGTTAAGACACCTGTTTTCCTTGGAAATGCCATTGCGGAGATGGGGAAAATTGGTCAGGCTTATT
TTGCTGCAGAGCAGATAGGGCAGTCAGGTTTCAAACCTGACCTGTCTGATTTTAACGGGGTTATGCTCAATCTTTTCTTT
GCCTATGCGGCGACGGTTGTGGCTTCCTTGATTTACACTCTCCTCTTCACGCGTATCGTGGCTCATTCGACCAACCGTAT
GCGTAAGGGCTTATTTGGCAAGCTGGAACGTTTGACAGTTGCCTTCTTTGATAGCCACAAGGACGGGGATATTCTTTCTC
GCTTTACCAGTGATTTGGACAATATCCAAAACGCTTTTAACCAGTCCTTGACCCAAGTGGTGACCAACATTGCCCTTTAT
GTCGGTATGGTTATTATGATGTTCCGTCAGGATACTCGCTTGGCCTTGGTGACCATTGCTTCTACGCCAGTTGCCTTGAT
TGCCTTGGTCGTTATCATCCGCCTATCACGGAAATATACTGATAAGCAACAGGCTGCGGTATCTAAGCTTAATGCATACA
TGGATGAGAAGATTTCCGGACAAAAAGCGATTATTGTACAAGGTGTGCAGGAAGAGACAATTGATGGTTTCTTGGAACTC
AATGAAGAAGTTCGTCGTACGACCTTCAAGGGACGCTTGTTTGGTGGGATTCTCTTCCCATTTATGAATGGGATGAGTTT
GGTCAATACGGCCATTGTTATCTTTGCAGGCTCCAGCATTGTTCTCAACGATAGCTCGCTGGAAACAGCTGCCGCACTTG
GTCTGGTCGTGACCTTTGTTCAATATTCGCAACAGTATTACCAGCCTATCATGCAGATTGCCTCTAGCTGGGCAGAATTG
CAGTTGGCTTTCACAGGTGCTCACCGTATTCAGGAAATGTTTGATGAGCCTGAGGAAGTTCGTGCTCAAAACGCTCCGCT
ATTTACCGAATTAAAAGAAGGTGTTGAAATTAAGGACATCGACTTTGGCTACCTGCCGGGTCAGAAGGTCTTGGACAAGG
TGTCAATCTCTGCTCCTAAGGGCAAAATGGTGGCGGTCGTTGGTCCGACAGGATCTGGTAAGACTACCATTATGAACTTG
ATTAACCGCTTCTACGATGTCAATGGTGGTAGTGTGGCCTTTGATGGTCGCGATATTCGGGAATATGATTTGGATAGCTT
GCGGGATAAGGTCGGTATCGTCTTGCAGGAGTCGGTGCTATTCTCGGGTACTATTGCGGACAATATCCGCTTTGGTGATG
AGAGCATTTCGCAGGAAATGGTGGAAACCGCAGCCCGTGCCACCCATATCCACGACTTTATCATGAGCTTGCCAGAGGGC
TATGAGACCTTTGTGACCGATGATGAGAATGTCTTCTCAACAGGTCAGAAGCAGCTGATTTCCATTGCCCGTACGCTCTT
GACAGATCCACAAGTCTTGATTCTGGACGAAGCAACGTCTAACGTTGATACCGTAACGGAAGCCAAAATTCAAAAGGCCA
TGGAGGCCATTATCGCTGGACGGACCAGCTTCGTCATTGCCCACCGCCTCAAAACCATTCTCAATGCGGACGAAATCATC
GTCCTCAAAGATGGAAAAGTGATTGAGCAAGGCAACCACAGCCAGCTCCTCAAACTCAATGGCTTCTACGCCGAACTCTA
CCACAACCAGTTTGTGTTTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-307)

ABC transporter (ABC_tran)

(371-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.457

98.822

0.36