Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   K9C16_RS02055 Genome accession   NZ_CP082952
Coordinates   437969..438529 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Cl300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432969..443529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9C16_RS02030 (K9C16_02035) - 435110..435240 (-) 131 Protein_391 hypothetical protein -
  K9C16_RS02035 (K9C16_02040) rpoZ 435279..435557 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  K9C16_RS02040 (K9C16_02045) gmk 435630..436259 (-) 630 WP_000015937.1 guanylate kinase -
  K9C16_RS02045 (K9C16_02050) ispH 436382..437332 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K9C16_RS02050 (K9C16_02055) fimU 437502..437975 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  K9C16_RS02055 (K9C16_02060) pilV 437969..438529 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  K9C16_RS02060 (K9C16_02065) pilW 438530..439531 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  K9C16_RS02065 (K9C16_02070) pilX 439528..440346 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=603867 K9C16_RS02055 WP_002194578.1 437969..438529(+) (pilV) [Acinetobacter baumannii strain Cl300]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=603867 K9C16_RS02055 WP_002194578.1 437969..438529(+) (pilV) [Acinetobacter baumannii strain Cl300]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414