Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   K8351_RS07915 Genome accession   NZ_CP082947
Coordinates   1487925..1488440 (+) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain C203016     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1482925..1493440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8351_RS07890 (K8351_07855) - 1483381..1483719 (+) 339 WP_002777761.1 hypothetical protein -
  K8351_RS07895 (K8351_07860) - 1483728..1484453 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  K8351_RS07900 (K8351_07865) dxr 1484450..1485526 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  K8351_RS07905 (K8351_07870) - 1485523..1486917 (+) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  K8351_RS07910 (K8351_07875) tsaD 1486914..1487921 (+) 1008 WP_002838047.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  K8351_RS07915 (K8351_07880) ctsG 1487925..1488440 (+) 516 WP_002780549.1 type II secretion system protein Machinery gene
  K8351_RS07920 (K8351_07885) - 1488440..1489681 (+) 1242 WP_223375566.1 DUF2920 family protein -
  K8351_RS07925 (K8351_07890) - 1489691..1491505 (+) 1815 WP_223375567.1 motility associated factor glycosyltransferase family protein -
  K8351_RS07930 (K8351_07895) - 1491602..1491826 (+) 225 Protein_1555 flagellin -
  K8351_RS07935 (K8351_07900) - 1491761..1492321 (-) 561 WP_223375638.1 hypothetical protein -
  K8351_RS07940 (K8351_07905) - 1492504..1492998 (+) 495 Protein_1557 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=603804 K8351_RS07915 WP_002780549.1 1487925..1488440(+) (ctsG) [Campylobacter coli strain C203016]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=603804 K8351_RS07915 WP_002780549.1 1487925..1488440(+) (ctsG) [Campylobacter coli strain C203016]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918